Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P06
         (120 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   1.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    20   3.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    19   7.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   7.3  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 53  ERSQGTQSTPLVPNSCS 3
           E+ +G  STP   +SCS
Sbjct: 311 EKYEGISSTPSQASSCS 327


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 76  SGRVGTSARLYY 111
           SGR+G  A LYY
Sbjct: 131 SGRMGYRALLYY 142


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = -2

Query: 89  PTRPLCV 69
           PT+P+CV
Sbjct: 406 PTKPMCV 412


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
          acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 4/10 (40%), Positives = 8/10 (80%)
 Frame = +2

Query: 44 VIAPNLWLQH 73
          ++  N+WL+H
Sbjct: 66 ILTTNVWLEH 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,837
Number of Sequences: 438
Number of extensions: 424
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 20
effective length of database: 137,583
effective search space used:  2614077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)