Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P03
         (419 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1075 + 24149570-24149833,24150008-24150307                       27   4.6  
07_03_1781 + 29468919-29468951,29469057-29469184,29469349-294694...    27   4.6  
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580...    27   4.6  
12_01_0675 + 5759641-5759722,5760247-5760291,5760690-5760775,576...    27   6.1  
10_08_0662 + 19662748-19662826,19662868-19663136,19664360-196645...    27   8.1  
08_02_0502 + 17844775-17845092,17845528-17845634,17846039-178464...    27   8.1  
02_02_0241 - 8204430-8205398                                           27   8.1  

>08_02_1075 + 24149570-24149833,24150008-24150307
          Length = 187

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 197 RTVCLVRSLANQQIVLGGLRSLGHRKRE 114
           R V LVRSL +Q + LG L+    RKR+
Sbjct: 115 RQVLLVRSLISQPVELGVLQEQSMRKRD 142


>07_03_1781 +
           29468919-29468951,29469057-29469184,29469349-29469433,
           29469771-29469824,29470072-29470163,29470280-29470383,
           29470811-29470886,29471231-29471678,29471874-29471916,
           29471977-29472209,29472302-29472505,29472595-29472693,
           29472789-29472861,29473373-29473500,29473614-29473836,
           29473992-29474215,29474296-29474423,29475053-29475167,
           29475603-29475658,29475795-29475888,29475966-29476152,
           29476229-29476309,29476384-29476484,29476567-29476629,
           29476800-29476907
          Length = 1059

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 53  MPRVVFHYFSCKALGESGRMLLSYGGQDFEDHRVLS 160
           +P +V H+ S  A    G  L  YGG D     VL+
Sbjct: 305 LPVIVLHWSSRSADSNKGGHLFVYGGDDMGSEEVLT 340


>07_03_1615 -
           28157237-28157472,28157649-28157728,28157853-28158009,
           28158379-28158565,28158646-28158772,28159218-28159805,
           28159898-28160443,28161579-28161620,28162081-28162145,
           28162273-28162377,28162682-28162741,28163149-28163237,
           28163611-28163732,28163862-28163968,28164041-28164111,
           28164377-28164470,28165010-28165247,28166112-28166347
          Length = 1049

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 297 EEESFEIDQNVEFLHDIRAKSASVFYEADEELKAKKHEDFA 419
           +EE     + +   HD   K++    EA EE +AK+   FA
Sbjct: 802 QEELLSRQEQIRHAHDDLMKNSESILEAQEEFRAKQASIFA 842


>12_01_0675 +
           5759641-5759722,5760247-5760291,5760690-5760775,
           5760888-5760959,5761210-5761263,5761385-5761460,
           5761778-5761839,5762174-5762233,5762331-5762432
          Length = 212

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 107 RMLLSYGGQDFEDHRVLSADWPDFEPSTPFALLPVLVIDG 226
           R++L+  G D+E   V     PD+E   P   +P LV DG
Sbjct: 21  RIVLNLKGVDYEYKSVNPRTDPDYEKINPIKYIPALV-DG 59


>10_08_0662 +
           19662748-19662826,19662868-19663136,19664360-19664571,
           19665356-19665623,19665709-19666002
          Length = 373

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 98  ESGRMLLSYGGQD--FEDHRVLSADWPDFEPS 187
           +  RM    G QD  + D  V+   WP+FEP+
Sbjct: 276 KKARMATQQGVQDSFYRDMAVMFGRWPEFEPA 307


>08_02_0502 +
           17844775-17845092,17845528-17845634,17846039-17846492,
           17846623-17846694,17846804-17846925,17847079-17847294,
           17847392-17847500,17847618-17847730,17847916-17848063,
           17848274-17848396
          Length = 593

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -3

Query: 216 TKTGNRANGVLGSKSGQSADSTRWSSKSWPP*ERSMRPLSPRALHEK*WNTTLGM 52
           T   NR + ++G  S +    T W+  S+P  E  ++ L  RA  E  +N +LGM
Sbjct: 237 TSLANRISEIVGLYSDEDDADTEWAHGSFPL-EEYIKALD-RAKGELYYNHSLGM 289


>02_02_0241 - 8204430-8205398
          Length = 322

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 143 DHRVLSADWPDFEPS 187
           DH VLS DW  ++PS
Sbjct: 197 DHEVLSLDWDKYDPS 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,279,388
Number of Sequences: 37544
Number of extensions: 223945
Number of successful extensions: 608
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)