Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P03
         (419 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.61 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   0.80 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   5.6  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   7.5  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          21   7.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   9.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   9.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   9.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.61
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 366  PMRTWRECHAGIQRSDRFRRIP 301
            P  TW+   A +Q SDR R++P
Sbjct: 1306 PEVTWKVRGAVLQSSDRLRQLP 1327


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.8 bits (49), Expect = 0.80
 Identities = 23/83 (27%), Positives = 44/83 (53%)
 Frame = +3

Query: 3   TRRRSVNKVNLGIKY*SCLGSCSTISRARPSVRAVACFSLTVAKTSKTTEYYLLIGQTSN 182
           ++RRSV++ +LG        S S+ + +R S R+    S +V+++ +      +IG TSN
Sbjct: 168 SKRRSVSECSLGTA-----SSTSSTASSRNSDRSAG--SPSVSESDEVD----VIGYTSN 216

Query: 183 QAHRSPYCQFW*STVNNMPMSTA 251
           Q+    +     S+ + + MST+
Sbjct: 217 QSDTDDHSSVQSSSDSGVTMSTS 239


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 140 EDHRVLSADW 169
           ED+R+L  DW
Sbjct: 74  EDYRILDVDW 83


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 5/19 (26%), Positives = 15/19 (78%)
 Frame = -1

Query: 209 LAIGRTVCLVRSLANQQIV 153
           + +G+++C+ ++  N+QI+
Sbjct: 26  IRMGQSICMAKTGINKQII 44


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 134 DFEDHRVLSADWPDFEPS 187
           +FE++     D PDF PS
Sbjct: 11  EFEENVSFDIDDPDFAPS 28


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 188 TPFALLPVLVIDGK 229
           TPF +LP+L + G+
Sbjct: 183 TPFTVLPLLKVWGR 196


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 158 IVLGGLRSLGHRKREACDR 102
           IVLG L +  H  R  C R
Sbjct: 464 IVLGSLLNPSHMYRAVCGR 482


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 188 TPFALLPVLVIDGK 229
           TPF +LP+L + G+
Sbjct: 183 TPFTVLPLLKVWGR 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,539
Number of Sequences: 438
Number of extensions: 1966
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)