Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O24
         (155 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   1.8  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    25   1.8  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    24   2.4  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    23   5.4  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    23   7.2  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    23   7.2  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    22   9.5  

>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 47  VLTVNMSSSDPPTLLQWLGGQLPGNQRF 130
           V+++  ++   P +LQW GG+  G+  F
Sbjct: 706 VISIAKANPTFPIVLQWTGGRAGGHHSF 733


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = -3

Query: 153 NHTPPGVQNLWFPGSCPPSHCSNVGGSLDDIFTVRTPAVS 34
           NH P        P S PPS  +  GG       + TP +S
Sbjct: 290 NHLPKVDSKSPIPFSVPPSRATLTGGYASGSIGLSTPGLS 329


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 120 FPGSCPPSHCSNVGGSLDDIFT 55
           F GS P S+C   GG+L D+FT
Sbjct: 200 FFGSTPLSNC---GGTLSDLFT 218


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 32  LDTAGVLTVNMSSSDPPTLLQWLGG 106
           L   G LTV +  +  PTL+Q L G
Sbjct: 598 LGVGGALTVLLKDAIKPTLMQTLEG 622


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 86  LLQWLGGQLPGNQRFW 133
           L QW+     GN+RFW
Sbjct: 525 LPQWVRRLFKGNRRFW 540


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 14  REVRRRLDTAGVLTVNMSSSDPPTLLQWLGGQLPGNQRF 130
           ++V    D A    V  +S DP  + + LGGQ   +  F
Sbjct: 86  KDVTLNSDEAHSENVPSTSEDPDVVRRHLGGQAADDDNF 124


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 44  GVLTVNMSSSDPPTLLQ 94
           G+LTVN  S  PP  L+
Sbjct: 244 GLLTVNAGSDIPPRFLE 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 646,134
Number of Sequences: 5004
Number of extensions: 8831
Number of successful extensions: 34
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)