Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O24
         (155 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0598 - 4443474-4443917                                           26   3.6  
04_04_0028 - 22243272-22243577,22244564-22244713,22244919-222456...    26   4.8  
01_05_0559 + 23281408-23282457,23282580-23282942,23283938-232839...    26   4.8  
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863...    25   6.3  
10_05_0023 + 8171023-8171782,8172658-8172950                           25   8.3  

>07_01_0598 - 4443474-4443917
          Length = 147

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 155 ATILPPESKIFGFPEAARRAIV 90
           AT LPP     G P+AAR A+V
Sbjct: 36  ATPLPPHEPSTGAPDAARAAVV 57


>04_04_0028 -
           22243272-22243577,22244564-22244713,22244919-22245656,
           22247233-22247331,22247541-22247933,22248806-22248961
          Length = 613

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 132 QNLWFPGSCPPSHCSNVGGSLDDIFTVRTPAVSNRLRT 19
           Q+L FPG CP   C+ +   L     +RT  +S++ R+
Sbjct: 207 QHLAFPGCCPDLICT-ILSKLPQKEAIRTSVLSSKWRS 243


>01_05_0559 +
           23281408-23282457,23282580-23282942,23283938-23283991,
           23284088-23284156
          Length = 511

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 114 GSCPPSHCSNVGGSLDDIFTVRT 46
           G C P+  +N+ G+LD+I  + T
Sbjct: 249 GGCLPASVANMSGTLDEIILMNT 271


>01_03_0117 +
           12684729-12685886,12685978-12686145,12686292-12686336,
           12686438-12687280
          Length = 737

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 111 SCPPSHCSNVGGSLDDIFTVR 49
           S PP  C+  GG + ++F VR
Sbjct: 307 SSPPPPCTGGGGGISNVFDVR 327


>10_05_0023 + 8171023-8171782,8172658-8172950
          Length = 350

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 141 PGVQNLWFPGSC-PPSHCSNVG 79
           P  +N W PG+C PPS   +VG
Sbjct: 92  PNGENPWNPGNCFPPSLSYHVG 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,282,896
Number of Sequences: 37544
Number of extensions: 85389
Number of successful extensions: 269
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 14,793,348
effective HSP length: 32
effective length of database: 13,591,940
effective search space used: 258246860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)