Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_O23
(217 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 24 3.1
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 23 4.1
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 23 4.1
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb... 23 5.5
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 23 7.2
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 23 7.2
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 22 9.6
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 22 9.6
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 22 9.6
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 22 9.6
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 22 9.6
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3
Query: 110 SYIRHCIFILYGTPIF 63
S +RHC L G PIF
Sbjct: 416 SRVRHCALSLVGEPIF 431
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 96 LHFYFIRNPYICLVIRYSKNITHKF 22
LH + + Y+CLV +++ + KF
Sbjct: 252 LHSSIMNDKYVCLVSKHNNALEDKF 276
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 212 ELRNASHSSSSIVEGSLPVN 153
EL+N SH SSS VE S V+
Sbjct: 76 ELKNRSHFSSSPVEESSTVS 95
>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 240
Score = 23.0 bits (47), Expect = 5.5
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -2
Query: 117 SRF-IYSSLHFYFIRNPYICLVIRYSKNITHKFKHL 13
+RF I +FY PY VI Y K T K +L
Sbjct: 177 TRFQILEFFYFYLSPEPYSIDVIAYRKTRTEKQAYL 212
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 22.6 bits (46), Expect = 7.2
Identities = 6/24 (25%), Positives = 13/24 (54%)
Frame = -3
Query: 131 ARGCARVSYIRHCIFILYGTPIFV 60
+R C + Y+ ++YG P ++
Sbjct: 1803 SRSCCHLRYLNGAAPVIYGIPAYI 1826
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 22.6 bits (46), Expect = 7.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 165 FTCKCIITLALCPRLRSRFIYSSLHFYF 82
F C ++T+ALC L RF Y L F
Sbjct: 1283 FWCVTVLTIALC--LLPRFSYICLQKLF 1308
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 160 GKEPSTIELEEWDAFLNSN 216
G PS + LEEWD +L N
Sbjct: 225 GTYPSLL-LEEWDRYLMQN 242
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = +2
Query: 98 DEYMKRERSRGHRASVIIHLQVKNLQL*NSKNGM 199
D+Y ++ +HL KNL+L + N +
Sbjct: 558 DDYNNVQKILNESLEASVHLNTKNLELADLNNNL 591
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 22.2 bits (45), Expect = 9.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 47 YLITKQI*GFRIK*KCSDEYMKRERSRGHR 136
Y +QI RI +E +RE+S+G+R
Sbjct: 477 YKYVRQIESRRIHFSKEEEKREREKSKGYR 506
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +1
Query: 166 EPSTIELEEWDAFLNSN 216
+P ++L +W + LNSN
Sbjct: 1710 KPFQVDLNDWSSELNSN 1726
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -2
Query: 36 ITHKFKHLPAS 4
I HKFKH+P +
Sbjct: 181 IQHKFKHIPGA 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 817,179
Number of Sequences: 5004
Number of extensions: 13542
Number of successful extensions: 29
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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