Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O23
         (217 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1594 + 28111622-28111833,28111979-28112696                       27   2.7  
01_05_0502 + 22771428-22771466,22772327-22772430,22773043-227731...    27   2.7  
12_02_0979 - 25009721-25009975,25010058-25010127,25010216-250103...    26   3.6  

>08_02_1594 + 28111622-28111833,28111979-28112696
          Length = 309

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 123 LRSRFIYSSLHFYFIRNPYICLVIRYSKNITHKFKH 16
           L S ++Y    F ++ +PY C+    S   T K++H
Sbjct: 272 LHSPYVYDLHLFTYVYDPYACITAGLSIIPTSKYQH 307


>01_05_0502 +
           22771428-22771466,22772327-22772430,22773043-22773129,
           22773212-22773287,22773393-22773467,22773639-22773692,
           22773745-22773918,22774002-22774061,22774135-22774251,
           22774448-22774542,22774811-22775013,22775177-22775274,
           22775451-22775587,22776154-22776219,22776300-22776465,
           22776537-22776659,22776763-22776845,22776943-22777084,
           22777334-22777363,22777587-22777657,22777742-22778333
          Length = 863

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 108 IYSSLHFYFIRNPYICLVIRYSKNITH 28
           + SS+HF  +  P IC ++ ++K I H
Sbjct: 158 VLSSVHFSCVVLPIICCLVNWNKLIIH 184


>12_02_0979 -
           25009721-25009975,25010058-25010127,25010216-25010381,
           25010501-25010651,25010843-25010890,25011172-25011225,
           25011400-25011513,25012666-25012782,25012899-25012991,
           25013085-25013123,25013990-25014055
          Length = 390

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -1

Query: 145 YTSSVPA---AALAFHIFVTAFLFYTEPLYLFSNKI 47
           Y+++VP    +AL +H+F   ++ +  PL+L S+ I
Sbjct: 231 YSTAVPVIFLSALKYHVFPDKWVSFYRPLWLMSSVI 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,073,361
Number of Sequences: 37544
Number of extensions: 77964
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)