Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O23
         (217 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ556818-1|CAD89223.1| 2162|Drosophila melanogaster SMG1 protein...    29   0.67 
AE014298-963|AAF46207.2| 3218|Drosophila melanogaster CG32743-PA...    29   0.67 
AE014298-762|AAF46052.1|  643|Drosophila melanogaster CG17758-PA...    28   2.0  
AY089392-1|AAL90130.1|  262|Drosophila melanogaster AT21561p pro...    27   4.7  
AE014134-1159|AAN10597.1|  262|Drosophila melanogaster CG31910-P...    27   4.7  

>AJ556818-1|CAD89223.1| 2162|Drosophila melanogaster SMG1 protein
           protein.
          Length = 2162

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 150 IITLALCP--RLRSRFIYSSLHFYFIRNPYICLVIRYSKNITHKFKHLPASC 1
           ++ L LC   RLR+R   S +HF F  NPY+  V   S   T  +K L  +C
Sbjct: 455 VLYLLLCTVRRLRARLTPSLVHFIFQSNPYMTKVRLRSPGET-SYKLLLRTC 505


>AE014298-963|AAF46207.2| 3218|Drosophila melanogaster CG32743-PA
           protein.
          Length = 3218

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 150 IITLALCP--RLRSRFIYSSLHFYFIRNPYICLVIRYSKNITHKFKHLPASC 1
           ++ L LC   RLR+R   S +HF F  NPY+  V   S   T  +K L  +C
Sbjct: 455 VLYLLLCTVRRLRARLTPSLVHFIFQSNPYMTKVRLRSPGET-SYKLLLRTC 505


>AE014298-762|AAF46052.1|  643|Drosophila melanogaster CG17758-PA
           protein.
          Length = 643

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 147 ITLALCPRLRSRFIYSSLHFYFIRNPYICLVIRY 46
           + LAL P  R  FI+  ++F F+ N  I  V RY
Sbjct: 144 VLLALTPATRMAFIFIQMYFIFLNNEQI-KVYRY 176


>AY089392-1|AAL90130.1|  262|Drosophila melanogaster AT21561p
           protein.
          Length = 262

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 192 FFEFYS*RFFTCKCIITLALCPRLRSRFIYSSL 94
           F E+ + +F  CKCI  +  CP L+ +  + ++
Sbjct: 221 FEEYLNNQFVYCKCIYPIPTCPILKLKCSHQNI 253


>AE014134-1159|AAN10597.1|  262|Drosophila melanogaster CG31910-PA
           protein.
          Length = 262

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 192 FFEFYS*RFFTCKCIITLALCPRLRSRFIYSSL 94
           F E+ + +F  CKCI  +  CP L+ +  + ++
Sbjct: 221 FEEYLNNQFVYCKCIYPIPTCPILKLKCSHQNI 253


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,600,236
Number of Sequences: 53049
Number of extensions: 138404
Number of successful extensions: 233
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 24,988,368
effective HSP length: 51
effective length of database: 22,282,869
effective search space used: 445657380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)