Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O23
         (217 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016451-1|AAB66002.2|  294|Caenorhabditis elegans Serpentine re...    27   2.4  
Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AF016686-1|AAB66240.1|  399|Caenorhabditis elegans Hypothetical ...    25   7.3  
AC024796-11|AAK29890.2|  828|Caenorhabditis elegans Hypothetical...    25   7.3  
AC006641-5|AAF39825.1|  225|Caenorhabditis elegans Hypothetical ...    25   7.3  
U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AF016451-1|AAB66002.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein38 protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 121 ALAFHIFVTAFLFYTEPLYLFSNK 50
           A+A  +F T +LFY  P+  F N+
Sbjct: 47  AIADGVFSTLYLFYATPMVFFQNE 70


>Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical
           protein T08G11.3 protein.
          Length = 601

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 138 ALCPRLRSRFIYSSLHFYFIRNPYICLVIRYSKNITHKFKHLPA 7
           ALC     R  +S LH YF+ + +I     +  N  HK  H+ A
Sbjct: 25  ALCFHQHCRSRFSFLHIYFVSSLHISTYSSF-LNKRHKCDHVDA 67


>AF016686-1|AAB66240.1|  399|Caenorhabditis elegans Hypothetical
           protein R07C3.11 protein.
          Length = 399

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 63  CLVIRYSKNITHKFKHLPASC 1
           C ++   KN+  K KHL  SC
Sbjct: 222 CFIVCIPKNMQFKVKHLSLSC 242


>AC024796-11|AAK29890.2|  828|Caenorhabditis elegans Hypothetical
           protein Y48G1C.8 protein.
          Length = 828

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 141 LALCPRLRSRFIY 103
           LA CPRLR R IY
Sbjct: 515 LARCPRLRKRLIY 527


>AC006641-5|AAF39825.1|  225|Caenorhabditis elegans Hypothetical
           protein F45D11.12 protein.
          Length = 225

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -2

Query: 171 RFFTCKCIITLALCPRLRSRFIYSSLHFYFIRNPYICLVIRYS 43
           ++   + I T    P    +  +  +   F RNPY  L IRYS
Sbjct: 56  KYLNNRYITTYVDVPGFTEKQWFKHITDVFFRNPYTFLKIRYS 98


>U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical
           protein F07E5.8 protein.
          Length = 760

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 120 RSRFIYSSLHFYFI 79
           +S+ +YSS HFYF+
Sbjct: 76  KSKLVYSSDHFYFL 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,490,545
Number of Sequences: 27780
Number of extensions: 76136
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)