Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O22
         (221 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0533 - 29818276-29818866                                         40   2e-04
09_04_0567 + 18585556-18586113                                         34   0.013
12_02_0502 - 19746100-19746185,19746745-19750474                       25   8.3  
07_03_0583 - 19684388-19684498,19685083-19685216,19685765-196858...    25   8.3  

>02_05_0533 - 29818276-29818866
          Length = 196

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 107 MKIWTSEHTFNHSWETVAQAAWRKYPNP 190
           M ++T EH + H W+ V  AAWRK+ +P
Sbjct: 1   MVVYTQEHVYRHPWDRVTAAAWRKFTDP 28


>09_04_0567 + 18585556-18586113
          Length = 185

 Score = 34.3 bits (75), Expect = 0.013
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 116 WTSEHTFNHSWETVAQAAWRKY 181
           +T EH + H W  V  AAWRK+
Sbjct: 5   YTQEHVYRHPWHRVTAAAWRKF 26


>12_02_0502 - 19746100-19746185,19746745-19750474
          Length = 1271

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +2

Query: 116 WTSEHTFNHSWETVAQAAWRK 178
           W      NH W  V Q  W+K
Sbjct: 413 WLGSCVENHHWNAVLQKGWQK 433


>07_03_0583 -
           19684388-19684498,19685083-19685216,19685765-19685888,
           19685982-19686251,19686961-19687155,19687236-19687328,
           19687411-19687539,19687646-19689277
          Length = 895

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 100 IHYEDLDIRTYFQSFLG 150
           I   D+DI+TYF S++G
Sbjct: 530 IFERDIDIKTYFDSWIG 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,747,029
Number of Sequences: 37544
Number of extensions: 57153
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 14,793,348
effective HSP length: 53
effective length of database: 12,803,516
effective search space used: 256070320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)