Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O22
         (221 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical pr...    68   1e-12
Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical pr...    37   0.002
Z79605-5|CAB01907.2|  316|Caenorhabditis elegans Hypothetical pr...    27   2.4  

>Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical
           protein F15D3.6 protein.
          Length = 209

 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 26/38 (68%), Positives = 33/38 (86%)
 Frame = +2

Query: 107 MKIWTSEHTFNHSWETVAQAAWRKYPNPMNPAVIGTDV 220
           M+IW+SEH F+H WETVAQAA+RKYPNP+N ++ G DV
Sbjct: 1   MRIWSSEHIFDHEWETVAQAAFRKYPNPLNRSITGIDV 38


>Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical
           protein B0334.4 protein.
          Length = 210

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 107 MKIWTSEHT-FNHSWETVAQAAWRKYPNPMNPAVIGTDV 220
           MK+W S +T F +S++ VA A W +YPN     +I  DV
Sbjct: 1   MKLWDSPNTSFPYSFDEVASAFWDRYPNSHAKHIISEDV 39


>Z79605-5|CAB01907.2|  316|Caenorhabditis elegans Hypothetical
           protein ZK678.6 protein.
          Length = 316

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 220 YVCSYDSWIHWIRIFAPCCLCNRLPRMIESMF 125
           Y   +  W   + IFA  C+C+ LP+ + + F
Sbjct: 133 YESFWSRWYFILLIFAIACICSHLPKYLWTGF 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,215,580
Number of Sequences: 27780
Number of extensions: 52801
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 12,740,198
effective HSP length: 53
effective length of database: 11,267,858
effective search space used: 225357160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)