Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O21
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    59   3e-10
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    28   0.53 
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   0.93 
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    27   0.93 
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    24   8.7  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 58.8 bits (136), Expect = 3e-10
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
 Frame = +1

Query: 214 RLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHEL--AFPLSPDWQIDYESYEWTKLDPH 387
           RL+  RK  F    + G + D+TI+G +V +GH+   AF ++PDW     SY +TKLD +
Sbjct: 324 RLEASRKYIFGCCVVIGENGDNTITGAFVIKGHDYVPAFDVAPDWG----SYTFTKLDIN 379

Query: 388 SPDTKALLRDYFSW 429
            P+ KA + D ++W
Sbjct: 380 KPEDKAFIEDAWAW 393


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 308 PRQTHTPEMVESLSPPKRQTEAKACLRILSRRPLASS 198
           PR  HT  + E++       +A+A LRIL RR +A S
Sbjct: 397 PRPEHTGSVKEAIDLWHSTHDAEASLRILPRRMIAES 433


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 292 VWVWRGHELAFPLSPDWQIDYESYEWTKL 378
           ++V  GH    PLS  W  D E+  WT++
Sbjct: 260 IFVHGGHNDTGPLSDLWLFDLETLSWTEV 288


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +1

Query: 244 ASVCLFGGDNDSTISGVWVWRGHELAFPLSPD--WQIDYESYEWTKL 378
           A VC F GD+D  +   W+  G    F  + +  +QI  E Y W+ +
Sbjct: 675 ADVCGFLGDSDEELCSRWMAMGAFSPFYRNHNNIYQISQEPYTWSSV 721


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 187 RPV*LDAKGRLDKMRKQAFASVCLFGGDNDSTISGV 294
           RP+ L A+   D +R +A   +CL+G D D T S V
Sbjct: 241 RPIGLGAR---DTLRLEA--GMCLYGSDIDDTTSPV 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,207,415
Number of Sequences: 5004
Number of extensions: 17462
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)