Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_O21
(433 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 45 2e-05
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 44 7e-05
03_01_0170 + 1389759-1391159 30 0.70
12_01_1022 - 10435409-10435564,10435950-10436219,10436820-104371... 30 0.92
05_05_0038 - 21769936-21770199,21770785-21771198,21771274-217714... 29 1.2
06_01_0746 + 5580755-5582119 28 3.7
05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-19... 27 6.5
02_01_0193 - 1305109-1305249,1305677-1305835,1305922-1305969,130... 27 6.5
03_06_0722 - 35751490-35754357 27 8.6
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 45.2 bits (102), Expect = 2e-05
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +1
Query: 214 RLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHELAFPLSPDWQIDYESYEWTKLD 381
R+D RK AF + + G + + G+W++RG E+ D D E YEWTK+D
Sbjct: 337 RMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIP-KFVMDEVYDMELYEWTKVD 391
Score = 45.2 bits (102), Expect = 2e-05
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +1
Query: 214 RLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHELAFPLSPDWQIDYESYEWTKLD 381
R+D RK AF + + G + + G+W++RG E+ D D E YEWTK+D
Sbjct: 902 RMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIP-KFVMDEVYDMELYEWTKVD 956
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 43.6 bits (98), Expect = 7e-05
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 214 RLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHELAFPLSPDWQIDYESYEWTKLD 381
R+D RK AF + + G + G+W++RG ++ D D E YEWTK+D
Sbjct: 348 RMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDIP-KFVMDEVYDMELYEWTKVD 402
>03_01_0170 + 1389759-1391159
Length = 466
Score = 30.3 bits (65), Expect = 0.70
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 318 ELVAAPDPHAGDGGVVVASEEADGGEGLLAHLVEAPFGI 202
ELV+APD GD G +V S D GL + + E + I
Sbjct: 169 ELVSAPDELVGDIGTLVTSSGTDQTNGLSSQVYEMLYRI 207
>12_01_1022 -
10435409-10435564,10435950-10436219,10436820-10437125,
10437932-10438057,10439825-10439893,10440443-10440487,
10440717-10440776,10441527-10441589,10442186-10442266,
10442494-10442916
Length = 532
Score = 29.9 bits (64), Expect = 0.92
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 324 EGELVAAPDPHAG-DGGVVVASEEADGGEGLLAHLVEAPFGIE 199
+GE + P P DG VVVA +E GGE L V A G+E
Sbjct: 54 QGEELLLPKPTGWEDGPVVVAGDEVSGGEKLPGE-VAAAVGVE 95
>05_05_0038 -
21769936-21770199,21770785-21771198,21771274-21771434,
21771544-21771607,21771682-21771864,21772355-21772520,
21773397-21773528,21775085-21775599
Length = 632
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = -2
Query: 333 REREGELVAAPDP-----HAGDGGVVVASEEADGGE 241
R R + A P+P A DG V +AS EADGGE
Sbjct: 302 RRRTALVAALPEPLQPLSPAQDGAVALASTEADGGE 337
>06_01_0746 + 5580755-5582119
Length = 454
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/26 (61%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 309 AAPDPHAGDGGVVVAS-EEADGGEGL 235
AA P AG GGVVVA AD G GL
Sbjct: 18 AASAPGAGAGGVVVARVTHADAGRGL 43
>05_01_0029 +
187769-188707,188971-189246,189978-190174,190263-190404,
190584-190862,190941-191013,191331-191379,192169-192433,
192576-192631,192777-192845,193028-193139,193682-193771,
193955-194125,194449-194506,194970-195128,195379-195401
Length = 985
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 333 REREGELVAAPDPHAGDGGVVVASEEADGGEGLL 232
R+ L A P G GG++VASE+A G ++
Sbjct: 273 RKNGAHLQAIPFARPGTGGLIVASEDAGIGSDVV 306
>02_01_0193 -
1305109-1305249,1305677-1305835,1305922-1305969,
1306621-1306752,1306842-1306896,1307600-1307649,
1307822-1307917,1308001-1308078,1308169-1308243,
1308648-1308764,1308843-1308911,1309035-1309358,
1309534-1309587,1309688-1309747
Length = 485
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 337 DWQIDYESYEWTKLDPHSPDTKALLRD 417
D++ D E PHSPD +AL R+
Sbjct: 312 DYRFDVSKLEPVIAKPHSPDNRALARE 338
>03_06_0722 - 35751490-35754357
Length = 955
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -2
Query: 309 AAPDPHAGDGGVVVASEEADGG 244
AAPD + DGG V++S EA GG
Sbjct: 250 AAPDYISLDGGGVLSSREAAGG 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,167,400
Number of Sequences: 37544
Number of extensions: 150089
Number of successful extensions: 733
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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