Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O21
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72507-15|CAJ55245.1|  365|Caenorhabditis elegans Hypothetical p...   111   2e-25
Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical pr...   111   2e-25
Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical pr...   111   2e-25
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    33   0.067
U50067-5|AAY86219.1|  306|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    29   1.9  
U28741-3|AAA68327.2|  410|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z72507-15|CAJ55245.1|  365|Caenorhabditis elegans Hypothetical
           protein F17C11.9c protein.
          Length = 365

 Score =  111 bits (267), Expect = 2e-25
 Identities = 46/72 (63%), Positives = 57/72 (79%)
 Frame = +1

Query: 214 RLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHELAFPLSPDWQIDYESYEWTKLDPHSP 393
           RL+K++K AFAS+ LFG DN+STISG+WVW+G +LAF LSPDWQ+DYESY WTKLD  S 
Sbjct: 278 RLEKLKKNAFASMILFGTDNNSTISGIWVWKGDKLAFELSPDWQVDYESYTWTKLDAKSD 337

Query: 394 DTKALLRDYFSW 429
            TK  + +Y  W
Sbjct: 338 ATKKEVNEYLMW 349


>Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical
           protein F17C11.9b protein.
          Length = 373

 Score =  111 bits (267), Expect = 2e-25
 Identities = 46/72 (63%), Positives = 57/72 (79%)
 Frame = +1

Query: 214 RLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHELAFPLSPDWQIDYESYEWTKLDPHSP 393
           RL+K++K AFAS+ LFG DN+STISG+WVW+G +LAF LSPDWQ+DYESY WTKLD  S 
Sbjct: 286 RLEKLKKNAFASMILFGTDNNSTISGIWVWKGDKLAFELSPDWQVDYESYTWTKLDAKSD 345

Query: 394 DTKALLRDYFSW 429
            TK  + +Y  W
Sbjct: 346 ATKKEVNEYLMW 357


>Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical
           protein F17C11.9a protein.
          Length = 398

 Score =  111 bits (267), Expect = 2e-25
 Identities = 46/72 (63%), Positives = 57/72 (79%)
 Frame = +1

Query: 214 RLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHELAFPLSPDWQIDYESYEWTKLDPHSP 393
           RL+K++K AFAS+ LFG DN+STISG+WVW+G +LAF LSPDWQ+DYESY WTKLD  S 
Sbjct: 311 RLEKLKKNAFASMILFGTDNNSTISGIWVWKGDKLAFELSPDWQVDYESYTWTKLDAKSD 370

Query: 394 DTKALLRDYFSW 429
            TK  + +Y  W
Sbjct: 371 ATKKEVNEYLMW 382


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 33.5 bits (73), Expect = 0.067
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 325  PLSPDWQIDYESYEWTKL 378
            PL PD Q+D+++YEW KL
Sbjct: 2672 PLGPDGQVDFQNYEWQKL 2689


>U50067-5|AAY86219.1|  306|Caenorhabditis elegans Hypothetical
           protein C18F3.4 protein.
          Length = 306

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 272 LSPPKRQTEAKACLRILSRRPLASSQTGLWTP 177
           LSPP+RQ+   + L  +S   + +  T  WTP
Sbjct: 89  LSPPRRQSNPHSSLPAISSSTVKNEPTDSWTP 120


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
            autosome protein2 protein.
          Length = 1758

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = -3

Query: 416  SRSSALVSGLWGXXXXXXXXXXSICQSGESGK--ASSWPRQTHTPEMVESLSPPKRQTEA 243
            S S++  S L G            CQ  E GK  +S W    HTP+ +  ++   ++ + 
Sbjct: 1674 SSSTSSASPLQGGAKPSTNQARHYCQFPECGKNFSSEWNLARHTPDNINLIAEQSKKYQL 1733

Query: 242  KACLRILSRRPLASSQT 192
            +  +R+  +  + ++ T
Sbjct: 1734 EHVIRMADQFMMNTNYT 1750


>U28741-3|AAA68327.2|  410|Caenorhabditis elegans Hypothetical
           protein F35D2.1 protein.
          Length = 410

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +1

Query: 241 FASVCLFGGDNDSTISGVWVWRGHEL 318
           FA+    G D D  IS V  WRGHEL
Sbjct: 96  FANQFSGGVDLDPAISRVSHWRGHEL 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,975,553
Number of Sequences: 27780
Number of extensions: 104559
Number of successful extensions: 391
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)