Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O20
         (181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    27   0.33 
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    25   1.8  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    24   2.3  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    23   5.3  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    23   5.3  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    22   9.3  
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    22   9.3  

>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 52  DQAFYKTVEMYQFEANDLITKMIEEKNHAGGQNVYGANDDDDE 180
           +QA++  +   Q E+++   + + +  H    NV+  +D DDE
Sbjct: 74  EQAYHSNIRYEQEESDNEEFENVVKNGHEASTNVFYESDGDDE 116


>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = -2

Query: 147 LATCMVFLFNHFCY*IICFKLIHFYSFIKCLILIYISNQSCNYSIKA 7
           + + +V  F+H     + F ++ FYSF   ++ ++ +NQ   + I +
Sbjct: 119 MPSMIVSAFSHQSGWHLLFNMVAFYSFAPAIVDVFGNNQFVAFYISS 165


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 111 CY*IICFKLIHFYSFIKCLILIYISN 34
           CY  +C K+ HF  F  C+     +N
Sbjct: 511 CYGDLCMKVAHFPQFRSCVFQRLFTN 536


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 34  IRDVDQDQAFYKTVEMYQFEANDLITKMIEEKNH 135
           +RD  Q +  + T   Y+   +D   K +E+K H
Sbjct: 657 LRDTSQKRESHSTPHDYEPHVSDKNDKSVEDKLH 690


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 139 GGQNVYGANDDDDE 180
           G    YG++DDDDE
Sbjct: 29  GSYAAYGSSDDDDE 42


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +1

Query: 70  TVEMYQFEANDLITKMIEE 126
           +++  Q EAND++ +++EE
Sbjct: 12  SIDRSQDEANDVVDRIVEE 30


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 161 APYTFWPPAW 132
           AP T W PAW
Sbjct: 174 APGTIWSPAW 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.134    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,459
Number of Sequences: 5004
Number of extensions: 7252
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)