Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O20
         (181 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0260 - 1993075-1994312,1996249-1997191                           29   0.53 
07_03_0342 + 16963528-16963598,16963668-16964235,16964350-169647...    28   0.92 
08_02_1372 + 26500093-26500154,26500733-26500933,26501858-265019...    27   2.1  
01_06_1753 - 39664219-39665445                                         27   2.8  
01_01_0461 - 3414127-3414867                                           27   2.8  
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427...    25   6.5  
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562...    25   6.5  
09_01_0028 + 486800-486890,486928-488009,488825-489190,489342-48...    25   8.6  

>05_01_0260 - 1993075-1994312,1996249-1997191
          Length = 726

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 13  DRVVTTLIRDVDQDQAFY-KTVEMYQFEANDLITKMIEEKNHAGGQNVYGANDDDD 177
           DR      R + + Q F   T+  YQF  NDL++      +  GG  + GA  D +
Sbjct: 208 DRTTPRSYRVLSRAQVFILPTINSYQFNTNDLVSSSWMNTSSIGGTLLRGAIMDQE 263


>07_03_0342 +
           16963528-16963598,16963668-16964235,16964350-16964760,
           16964848-16965051,16968663-16969032,16972466-16972601,
           16972680-16972779,16972933-16973190,16973276-16973314,
           16973420-16973458
          Length = 731

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 49  QDQAFYKTVEMYQFEANDLITKMIEEKNHAGGQNVYGAN 165
           +DQ  Y+ +   Q   +DL+TK +  K H G     G++
Sbjct: 205 EDQRVYEAIAYSQRREDDLLTKALGNKEHRGRTRGVGSS 243


>08_02_1372 +
           26500093-26500154,26500733-26500933,26501858-26501936,
           26502652-26502752,26503417-26503516,26503893-26503934,
           26504026-26504067,26504352-26504509,26504708-26504780
          Length = 285

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 43  VDQDQAFYKTVEMYQFEANDLITKMIEEKNHAGGQNVY 156
           VDQ     +  +M   EAN  + + +EE NH  GQ V+
Sbjct: 186 VDQLTELQRKEQMVS-EANRCLRRKLEESNHVRGQQVW 222


>01_06_1753 - 39664219-39665445
          Length = 408

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 121 EEKNHAGGQNVYGANDDDDE 180
           EEK HAGG+N Y A +  +E
Sbjct: 347 EEKQHAGGRNHYHAYERHEE 366


>01_01_0461 - 3414127-3414867
          Length = 246

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 58  AFYKTVEM-YQFEANDLITKMIEEKNHAGGQNVYGANDDDDE 180
           +FY +  + ++   +   + M   + H GG   +G +DDDD+
Sbjct: 145 SFYSSYSLSFRSTQSPTCSSMRSLQGHGGGGRAFGDDDDDDD 186


>04_04_0923 +
           29441740-29441980,29442321-29442401,29442630-29442719,
           29443123-29443203,29443721-29443774,29444062-29444111,
           29444542-29444623,29444734-29444838,29445514-29445641,
           29445726-29445797,29445887-29445937,29446029-29446100,
           29446201-29446278,29446446-29447270,29447648-29448556
          Length = 972

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 46  DQDQAFYKTVEMYQFEANDLITKMIEEKNHAGGQNVYGANDDDDE 180
           D D A    VE    E N+L    ++  N + GQNV  + D+  E
Sbjct: 361 DMDYANTNQVEDEDLEDNELENWNLDMFNLSNGQNVQNSADNSTE 405


>04_03_0659 -
           18453778-18453903,18453976-18454963,18455496-18456229,
           18456292-18456360,18456528-18456605,18456703-18456789,
           18456881-18456931,18457021-18457092,18457177-18457304,
           18458194-18458275,18458705-18458754,18459043-18459096,
           18459586-18459675,18459903-18459983,18460443-18460538,
           18460960-18461022,18461313-18461402,18461630-18461698,
           18462051-18462291
          Length = 1082

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 46  DQDQAFYKTVEMYQFEANDLITKMIEEKNHAGGQNVYGANDDDDE 180
           D D A    VE    E N+L    ++  N + GQNV  + D+  E
Sbjct: 410 DMDYADTNQVEDEDLEDNELENWNLDMFNLSNGQNVQNSADNSTE 454


>09_01_0028 +
           486800-486890,486928-488009,488825-489190,489342-489692
          Length = 629

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 46  DQDQAFYKTVEMYQFEANDLITKMIEEKNHA 138
           D+ Q F    EM  FEAND +    E  +HA
Sbjct: 74  DEMQVFATNDEMQVFEANDEMQVFEEMSDHA 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.134    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,395,965
Number of Sequences: 37544
Number of extensions: 45427
Number of successful extensions: 223
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)