Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_O19
(286 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 53 7e-09
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 34 0.003
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 34 0.005
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 32 0.018
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 31 0.032
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo... 29 0.17
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 27 0.40
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 27 0.69
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac... 25 1.6
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 2.1
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 25 2.1
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 24 3.7
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 24 3.7
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 24 4.9
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 23 6.5
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 53.2 bits (122), Expect = 7e-09
Identities = 23/48 (47%), Positives = 31/48 (64%)
Frame = +3
Query: 120 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKN 263
KM +N+ + V +D RTF+G AFD MNL+L DC+E R IK +N
Sbjct: 5 KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQN 52
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 34.3 bits (75), Expect = 0.003
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 147 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEL 242
V V L+ R G A+D+H+N++LGD EE+
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEI 53
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 33.9 bits (74), Expect = 0.005
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 144 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 239
RV+VI D R +G+ K FD NLIL D E
Sbjct: 10 RVQVITNDGRVVLGSLKGFDHTTNLILSDSFE 41
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 31.9 bits (69), Expect = 0.018
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MTI + + I + VI++ R F GT FD ++N++L D E + K ++
Sbjct: 3 MTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSE 62
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 31.1 bits (67), Expect = 0.032
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 123 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 239
+ ++ + R++ R G K FD+ MNL+L D EE
Sbjct: 28 LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEE 66
>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
Smd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 115
Score = 28.7 bits (61), Expect = 0.17
Identities = 12/51 (23%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +3
Query: 96 KMTIGKNNKMQQHINYRVRVIL--QDSRTFIGTFKAFDKHMNLILGDCEEL 242
+ + G + +QQ + +V++ ++++ + KAFD+H N++L + +E+
Sbjct: 24 EFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEM 74
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 27.5 bits (58), Expect = 0.40
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 123 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTK 269
+QQH + + Q G + FD+ MN++L D + + +KN K
Sbjct: 20 LQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQ---VDAKNNK 65
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 26.6 bits (56), Expect = 0.69
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 126 AFYYSFRSSFWKTDCINNLR 67
AF+ +F SSF DC++N+R
Sbjct: 46 AFFENFASSFAACDCMSNIR 65
>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
Smf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 78
Score = 25.4 bits (53), Expect = 1.6
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 123 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEL 242
+Q I V V L+ + + GT ++ D +MNL L + EEL
Sbjct: 12 LQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEEL 51
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.0 bits (52), Expect = 2.1
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -3
Query: 209 VFIESFECTYEGTRVL*YYPDSIIDVLLHFIILSD 105
+F+ESFEC ++G V+ + D +L+ +++ D
Sbjct: 929 IFVESFECYFKG-EVVKFMRDKDALTVLNELLIDD 962
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 25.0 bits (52), Expect = 2.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 44 NLRKEIIYRKLLIQSVFQND 103
NLRKE++ R + S FQND
Sbjct: 412 NLRKELLSRAYIQGSSFQND 431
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 24.2 bits (50), Expect = 3.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 111 FRSSFWKTDCINNLR*IISFLRFVLP 34
FR T NNL+ +IS L F+LP
Sbjct: 541 FRVLLTGTPLQNNLKELISLLAFILP 566
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 24.2 bits (50), Expect = 3.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 114 SFRSSFWKTDCINNLR*IISFLRFVLP 34
+FR T NNL+ ++S L F+LP
Sbjct: 703 NFRLLLTGTPLQNNLKELVSLLAFILP 729
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 23.8 bits (49), Expect = 4.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 114 SFRSSFWKTDCINNLR*IISFLRFVLP 34
+FR T NNL+ +IS L F+LP
Sbjct: 565 NFRLLITGTPLQNNLKELISLLAFMLP 591
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 23.4 bits (48), Expect = 6.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 127 CILLFFPIVILENGLY*QFTINY 59
C+L+F PI+I + QF + Y
Sbjct: 284 CLLIFLPILIYAFTFWIQFAVLY 306
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,096,647
Number of Sequences: 5004
Number of extensions: 19468
Number of successful extensions: 43
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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