Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_O19
(286 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 102 2e-22
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 102 2e-22
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 102 2e-22
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 102 2e-22
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 102 2e-22
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 102 2e-22
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 102 2e-22
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 102 2e-22
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 102 2e-22
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 102 2e-22
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 102 2e-22
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 101 6e-22
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 100 1e-21
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 100 1e-21
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 100 1e-21
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 100 1e-21
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 100 1e-21
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 100 1e-21
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 100 1e-21
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 100 1e-21
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 100 1e-21
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 99 3e-21
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 92 3e-19
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 92 3e-19
BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for MG... 85 4e-17
AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear ribonucl... 85 4e-17
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 67 8e-12
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 39 0.003
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 39 0.003
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 39 0.003
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 39 0.003
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 39 0.003
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 36 0.031
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 36 0.031
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 36 0.031
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 36 0.031
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 36 0.031
U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein. 31 0.51
BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear ribonucle... 31 0.51
BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear ribonucle... 31 0.51
AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein. 31 0.51
BC012430-1|AAH12430.1| 360|Homo sapiens SEH1-like (S. cerevisia... 31 0.68
AK056940-1|BAB71317.1| 421|Homo sapiens protein ( Homo sapiens ... 31 0.68
AF514996-1|AAM76707.1| 360|Homo sapiens nucleoporin Seh1 protein. 31 0.68
AF431970-1|AAM44214.1| 421|Homo sapiens putative nucleoporin pr... 31 0.68
AF255625-1|AAM21169.1| 360|Homo sapiens putative nucleoporin pr... 31 0.68
AF136976-1|AAG49437.1| 360|Homo sapiens sec13-like protein prot... 31 0.68
AK128134-1|BAC87289.1| 377|Homo sapiens member 6 (SLC12A6). pr... 31 0.90
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 30 1.2
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 30 1.2
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 30 1.2
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 30 1.6
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 30 1.6
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 30 1.6
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 30 1.6
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 30 1.6
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 30 1.6
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 30 1.6
D38521-1|BAA07526.1| 1798|Homo sapiens KIAA0077 protein. 29 3.6
BC113668-1|AAI13669.1| 1729|Homo sapiens proteasome (prosome, ma... 29 3.6
BC112169-1|AAI12170.1| 1729|Homo sapiens proteasome (prosome, ma... 29 3.6
BC071768-1|AAH71768.1| 215|Homo sapiens PSME4 protein protein. 29 3.6
BC043602-1|AAH43602.1| 459|Homo sapiens PSME4 protein protein. 29 3.6
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 29 3.6
AY894755-1|AAX83870.1| 987|Homo sapiens proteasome activator 20... 29 3.6
AY894754-1|AAX83869.1| 1218|Homo sapiens proteasome activator 20... 29 3.6
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 29 3.6
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 29 3.6
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 28 6.3
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 28 6.3
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 28 6.3
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 28 6.3
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 28 6.3
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 28 6.3
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 28 6.3
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 28 6.3
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 28 6.3
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 102 bits (245), Expect = 2e-22
Identities = 46/62 (74%), Positives = 54/62 (87%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 102 bits (245), Expect = 2e-22
Identities = 46/62 (74%), Positives = 54/62 (87%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 102 bits (245), Expect = 2e-22
Identities = 46/62 (74%), Positives = 54/62 (87%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 102 bits (245), Expect = 2e-22
Identities = 46/62 (74%), Positives = 54/62 (87%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 102 bits (245), Expect = 2e-22
Identities = 46/62 (74%), Positives = 54/62 (87%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 102 bits (245), Expect = 2e-22
Identities = 46/62 (74%), Positives = 54/62 (87%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 102 bits (245), Expect = 2e-22
Identities = 46/62 (74%), Positives = 54/62 (87%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 102 bits (245), Expect = 2e-22
Identities = 46/62 (74%), Positives = 54/62 (87%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 102 bits (245), Expect = 2e-22
Identities = 46/62 (74%), Positives = 54/62 (87%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 102 bits (245), Expect = 2e-22
Identities = 46/62 (74%), Positives = 54/62 (87%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 102 bits (245), Expect = 2e-22
Identities = 46/62 (74%), Positives = 54/62 (87%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 101 bits (241), Expect = 6e-22
Identities = 45/62 (72%), Positives = 54/62 (87%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN++ A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 100 bits (239), Expect = 1e-21
Identities = 45/62 (72%), Positives = 52/62 (83%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 100 bits (239), Expect = 1e-21
Identities = 45/62 (72%), Positives = 52/62 (83%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 100 bits (239), Expect = 1e-21
Identities = 45/62 (72%), Positives = 52/62 (83%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 100 bits (239), Expect = 1e-21
Identities = 45/62 (72%), Positives = 52/62 (83%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 100 bits (239), Expect = 1e-21
Identities = 45/62 (72%), Positives = 52/62 (83%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 100 bits (239), Expect = 1e-21
Identities = 45/62 (72%), Positives = 52/62 (83%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 100 bits (239), Expect = 1e-21
Identities = 45/62 (72%), Positives = 52/62 (83%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 100 bits (239), Expect = 1e-21
Identities = 45/62 (72%), Positives = 52/62 (83%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 100 bits (239), Expect = 1e-21
Identities = 45/62 (72%), Positives = 52/62 (83%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 98.7 bits (235), Expect = 3e-21
Identities = 45/62 (72%), Positives = 51/62 (82%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC E RKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPE 60
Query: 279 RE 284
RE
Sbjct: 61 RE 62
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 92.3 bits (219), Expect = 3e-19
Identities = 42/55 (76%), Positives = 47/55 (85%)
Frame = +3
Query: 120 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTADRE 284
KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN+K A+RE
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAERE 55
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 92.3 bits (219), Expect = 3e-19
Identities = 42/55 (76%), Positives = 47/55 (85%)
Frame = +3
Query: 120 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTADRE 284
KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+E RKIK KN+K A+RE
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAERE 55
>BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for
MGC:71285) protein.
Length = 208
Score = 85.0 bits (201), Expect = 4e-17
Identities = 38/62 (61%), Positives = 48/62 (77%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
+T+GK++KM H ++R+R ILQD R FIGTFKAFDKHMN+I DC+E RK+K KN K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 279 RE 284
RE
Sbjct: 101 RE 102
>AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear
ribonucleoprotein N (SNRPN) pseudogene protein.
Length = 208
Score = 85.0 bits (201), Expect = 4e-17
Identities = 38/62 (61%), Positives = 48/62 (77%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
+T+GK++KM H ++R+R ILQD R FIGTFKAFDKHMN+I DC+E RK+K KN K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 279 RE 284
RE
Sbjct: 101 RE 102
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 67.3 bits (157), Expect = 8e-12
Identities = 30/40 (75%), Positives = 32/40 (80%)
Frame = +3
Query: 165 DSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTADRE 284
D R FIGTFKAFDKHMNLIL DC+E RKIK KN K +RE
Sbjct: 1 DGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPERE 40
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 123 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 239
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 123 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 239
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 123 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 239
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 123 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 239
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 123 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 239
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.031
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 135 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 239
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.031
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 135 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 239
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.031
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 135 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 239
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.031
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 135 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 239
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.031
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 135 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 239
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein.
Length = 118
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 87 PFSKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEL 242
P S +T N Q IN R +++ +G KAFD+H N++L + +E+
Sbjct: 28 PLSVLTQSVKNNTQVLINCR------NNKKLLGRVKAFDRHCNMVLENVKEM 73
>BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 87 PFSKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEL 242
P S +T N Q IN R +++ +G KAFD+H N++L + +E+
Sbjct: 28 PLSVLTQSVKNNTQVLINCR------NNKKLLGRVKAFDRHCNMVLENVKEM 73
>BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 87 PFSKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEL 242
P S +T N Q IN R +++ +G KAFD+H N++L + +E+
Sbjct: 28 PLSVLTQSVKNNTQVLINCR------NNKKLLGRVKAFDRHCNMVLENVKEM 73
>AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein.
Length = 118
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 87 PFSKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEL 242
P S +T N Q IN R +++ +G KAFD+H N++L + +E+
Sbjct: 28 PLSVLTQSVKNNTQVLINCR------NNKKLLGRVKAFDRHCNMVLENVKEM 73
>BC012430-1|AAH12430.1| 360|Homo sapiens SEH1-like (S. cerevisiae)
protein.
Length = 360
Score = 31.1 bits (67), Expect = 0.68
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 114 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 233
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AK056940-1|BAB71317.1| 421|Homo sapiens protein ( Homo sapiens
cDNA FLJ32378 fis, clone SKMUS1000022, weakly similar to
NUCLEAR PORE PROTEIN SEH1 HOMOLOG. ).
Length = 421
Score = 31.1 bits (67), Expect = 0.68
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 114 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 233
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF514996-1|AAM76707.1| 360|Homo sapiens nucleoporin Seh1 protein.
Length = 360
Score = 31.1 bits (67), Expect = 0.68
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 114 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 233
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF431970-1|AAM44214.1| 421|Homo sapiens putative nucleoporin
protein SEH1B protein.
Length = 421
Score = 31.1 bits (67), Expect = 0.68
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 114 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 233
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF255625-1|AAM21169.1| 360|Homo sapiens putative nucleoporin
protein SEH1A protein.
Length = 360
Score = 31.1 bits (67), Expect = 0.68
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 114 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 233
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF136976-1|AAG49437.1| 360|Homo sapiens sec13-like protein
protein.
Length = 360
Score = 31.1 bits (67), Expect = 0.68
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 114 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 233
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AK128134-1|BAC87289.1| 377|Homo sapiens member 6 (SLC12A6).
protein.
Length = 377
Score = 30.7 bits (66), Expect = 0.90
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 122 NATTHQLSSQGNITRLAYLHRYIQSFR*THESNTRRL 232
NATTH S +TR YL ++ S TH + RL
Sbjct: 5 NATTHSCSHPHTLTRTMYLITHMLSHTCTHNARAHRL 41
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 135 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 239
I R+ ++++ + +GT FD +N++L D E
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 135 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 239
I R+ ++++ + +GT FD +N++L D E
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 135 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 239
I R+ ++++ + +GT FD +N++L D E
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 123 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTADR 281
+Q +V + Q + G FD++MNL+L D EE+ K+K+ K R
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS-KTKSRKQLGR 76
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 123 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTADR 281
+Q +V + Q + G FD++MNL+L D EE+ K+K+ K R
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS-KTKSRKQLGR 76
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 123 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTADR 281
+Q +V + Q + G FD++MNL+L D EE+ K+K+ K R
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS-KTKSRKQLGR 76
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 123 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTADR 281
+Q +V + Q + G FD++MNL+L D EE+ K+K+ K R
Sbjct: 14 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS-KTKSRKQLGR 65
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 123 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTADR 281
+Q +V + Q + G FD++MNL+L D EE+ K+K+ K R
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS-KTKSRKQLGR 76
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 123 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTADR 281
+Q +V + Q + G FD++MNL+L D EE+ K+K+ K R
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS-KTKSRKQLGR 76
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 123 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTADR 281
+Q +V + Q + G FD++MNL+L D EE+ K+K+ K R
Sbjct: 25 LQNRSQIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHS-KTKSRKQLGR 76
>D38521-1|BAA07526.1| 1798|Homo sapiens KIAA0077 protein.
Length = 1798
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = -1
Query: 268 LVFFDL-IFLNSSQS-PSIRFMCLSKALNVPMKVRESCNITLTR*LMCCCILLFFPIVI 98
+VF++L IFLN+ + IR++ +S + ++VRE TL+ L C + + P+ I
Sbjct: 1623 MVFYNLFIFLNNEDAVKDIRWLVISLLEDEQLEVREMAATTLSGLLQCNFLTMDSPMQI 1681
>BC113668-1|AAI13669.1| 1729|Homo sapiens proteasome (prosome,
macropain) activator subunit 4 protein.
Length = 1729
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = -1
Query: 268 LVFFDL-IFLNSSQS-PSIRFMCLSKALNVPMKVRESCNITLTR*LMCCCILLFFPIVI 98
+VF++L IFLN+ + IR++ +S + ++VRE TL+ L C + + P+ I
Sbjct: 1554 MVFYNLFIFLNNEDAVKDIRWLVISLLEDEQLEVREMAATTLSGLLQCNFLTMDSPMQI 1612
>BC112169-1|AAI12170.1| 1729|Homo sapiens proteasome (prosome,
macropain) activator subunit 4 protein.
Length = 1729
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = -1
Query: 268 LVFFDL-IFLNSSQS-PSIRFMCLSKALNVPMKVRESCNITLTR*LMCCCILLFFPIVI 98
+VF++L IFLN+ + IR++ +S + ++VRE TL+ L C + + P+ I
Sbjct: 1554 MVFYNLFIFLNNEDAVKDIRWLVISLLEDEQLEVREMAATTLSGLLQCNFLTMDSPMQI 1612
>BC071768-1|AAH71768.1| 215|Homo sapiens PSME4 protein protein.
Length = 215
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = -1
Query: 268 LVFFDL-IFLNSSQS-PSIRFMCLSKALNVPMKVRESCNITLTR*LMCCCILLFFPIVI 98
+VF++L IFLN+ + IR++ +S + ++VRE TL+ L C + + P+ I
Sbjct: 40 MVFYNLFIFLNNEDAVKDIRWLVISLLEDEQLEVREMAATTLSGLLQCNFLTMDSPMQI 98
>BC043602-1|AAH43602.1| 459|Homo sapiens PSME4 protein protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = -1
Query: 268 LVFFDL-IFLNSSQS-PSIRFMCLSKALNVPMKVRESCNITLTR*LMCCCILLFFPIVI 98
+VF++L IFLN+ + IR++ +S + ++VRE TL+ L C + + P+ I
Sbjct: 284 MVFYNLFIFLNNEDAVKDIRWLVISLLEDEQLEVREMAATTLSGLLQCNFLTMDSPMQI 342
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 123 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLIL-GDCEELRKIKSKNTKTAD 278
+ ++I+ +RV Q R G K FD +NL+L G E +R + T D
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTED 67
>AY894755-1|AAX83870.1| 987|Homo sapiens proteasome activator 200
kDa iii protein.
Length = 987
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = -1
Query: 268 LVFFDL-IFLNSSQS-PSIRFMCLSKALNVPMKVRESCNITLTR*LMCCCILLFFPIVI 98
+VF++L IFLN+ + IR++ +S + ++VRE TL+ L C + + P+ I
Sbjct: 812 MVFYNLFIFLNNEDAVKDIRWLVISLLEDEQLEVREMAATTLSGLLQCNFLTMDSPMQI 870
>AY894754-1|AAX83869.1| 1218|Homo sapiens proteasome activator 200 kDa
ii protein.
Length = 1218
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = -1
Query: 268 LVFFDL-IFLNSSQS-PSIRFMCLSKALNVPMKVRESCNITLTR*LMCCCILLFFPIVI 98
+VF++L IFLN+ + IR++ +S + ++VRE TL+ L C + + P+ I
Sbjct: 1043 MVFYNLFIFLNNEDAVKDIRWLVISLLEDEQLEVREMAATTLSGLLQCNFLTMDSPMQI 1101
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 123 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLIL-GDCEELRKIKSKNTKTAD 278
+ ++I+ +RV Q R G K FD +NL+L G E +R + T D
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTED 67
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 123 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLIL-GDCEELRKIKSKNTKTAD 278
+ ++I+ +RV Q R G K FD +NL+L G E +R + T D
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTED 67
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = +3
Query: 120 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKN 263
++++ ++ ++ + L R G + FD MNL++ +C E+ +N
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQN 55
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = +3
Query: 120 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKN 263
++++ ++ ++ + L R G + FD MNL++ +C E+ +N
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQN 55
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = +3
Query: 120 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKN 263
++++ ++ ++ + L R G + FD MNL++ +C E+ +N
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQN 55
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = +3
Query: 120 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKN 263
++++ ++ ++ + L R G + FD MNL++ +C E+ +N
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQN 55
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = +3
Query: 120 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKN 263
++++ ++ ++ + L R G + FD MNL++ +C E+ +N
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQN 55
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = +3
Query: 120 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKN 263
++++ ++ ++ + L R G + FD MNL++ +C E+ +N
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQN 55
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = +3
Query: 120 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKN 263
++++ ++ ++ + L R G + FD MNL++ +C E+ +N
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQN 55
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = +3
Query: 120 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKN 263
++++ ++ ++ + L R G + FD MNL++ +C E+ +N
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQN 55
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = +3
Query: 120 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKN 263
++++ ++ ++ + L R G + FD MNL++ +C E+ +N
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQN 55
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,575,136
Number of Sequences: 237096
Number of extensions: 568903
Number of successful extensions: 917
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 76,859,062
effective HSP length: 71
effective length of database: 60,025,246
effective search space used: 1380580658
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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