Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_O19
(286 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical pr... 93 2e-20
AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical ... 34 0.019
AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like ... 34 0.019
Z78012-3|CAB01413.1| 118|Caenorhabditis elegans Hypothetical pr... 33 0.044
Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical pr... 32 0.076
U42436-7|AAO61428.2| 223|Caenorhabditis elegans Hypothetical pr... 31 0.10
Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical pr... 30 0.23
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 25 6.6
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 25 6.6
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 25 6.6
AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G ... 25 6.6
AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear... 25 6.6
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 25 8.7
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 25 8.7
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 25 8.7
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 25 8.7
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 25 8.7
AC024746-3|AAF60399.2| 160|Caenorhabditis elegans Hypothetical ... 25 8.7
>Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical
protein W08E3.1 protein.
Length = 160
Score = 93.5 bits (222), Expect = 2e-20
Identities = 41/62 (66%), Positives = 49/62 (79%)
Frame = +3
Query: 99 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRKIKSKNTKTAD 278
MTI KNNKM H+NYR+++ILQD RTFIG FKAFDKHMN++L +CEE R+IK K K D
Sbjct: 1 MTISKNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTD 60
Query: 279 RE 284
E
Sbjct: 61 GE 62
>AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical
protein Y62E10A.12 protein.
Length = 102
Score = 33.9 bits (74), Expect = 0.019
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +3
Query: 135 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 239
++ RV V +++ R G +AFD+H+N++L + EE
Sbjct: 25 LDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEE 59
>AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like
protein protein 8 protein.
Length = 98
Score = 33.9 bits (74), Expect = 0.019
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 123 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 239
+ ++N V V+ D R +G K FD+ +NL++ D E
Sbjct: 5 LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHE 43
>Z78012-3|CAB01413.1| 118|Caenorhabditis elegans Hypothetical
protein C52E4.3 protein.
Length = 118
Score = 32.7 bits (71), Expect = 0.044
Identities = 11/35 (31%), Positives = 25/35 (71%)
Frame = +3
Query: 138 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEL 242
N++V + ++++ +G KAFD+H N++L + +E+
Sbjct: 39 NHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73
>Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical
protein ZK593.7 protein.
Length = 104
Score = 31.9 bits (69), Expect = 0.076
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 123 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 239
+ + ++ +RV Q R G + FD+ +N++L DC E
Sbjct: 16 LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCRE 54
>U42436-7|AAO61428.2| 223|Caenorhabditis elegans Hypothetical
protein C49H3.4 protein.
Length = 223
Score = 31.5 bits (68), Expect = 0.10
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 126 QQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 239
Q+ I RVR ++ R F G FD+H NL++ D E
Sbjct: 120 QKRIEVRVRSAIRIDRIFEGIPTTFDEHFNLMMKDVTE 157
>Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical
protein F28F8.3 protein.
Length = 91
Score = 30.3 bits (65), Expect = 0.23
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 135 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 239
I ++ VI+++ + +GT FD ++N++L D E
Sbjct: 22 IGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVE 56
>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 2 protein.
Length = 1785
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 102 SFWKTDCINNLR*IISFLRFVLPTT 28
S+W+TDC N + I+ F F L T
Sbjct: 1471 SYWQTDCGNYVGAIVYFCSFYLIIT 1495
>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1763
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 102 SFWKTDCINNLR*IISFLRFVLPTT 28
S+W+TDC N + I+ F F L T
Sbjct: 1449 SYWQTDCGNYVGAIVYFCSFYLIIT 1473
>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1785
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 102 SFWKTDCINNLR*IISFLRFVLPTT 28
S+W+TDC N + I+ F F L T
Sbjct: 1471 SYWQTDCGNYVGAIVYFCSFYLIIT 1495
>AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G
protein.
Length = 77
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/43 (20%), Positives = 25/43 (58%)
Frame = +3
Query: 120 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRK 248
+++++++ + + L +R G + FD MN+++ + E +K
Sbjct: 8 ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQK 50
>AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 7 protein.
Length = 77
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/43 (20%), Positives = 25/43 (58%)
Frame = +3
Query: 120 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEELRK 248
+++++++ + + L +R G + FD MN+++ + E +K
Sbjct: 8 ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQK 50
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 120 YYSFRSSFWKTDCINNLR*IISFLRFVLPTT 28
Y++ ++W+TDC N II F F L T
Sbjct: 1411 YWNEGMNYWETDCGNFYGAIIYFCSFYLIIT 1441
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 120 YYSFRSSFWKTDCINNLR*IISFLRFVLPTT 28
Y++ ++W+TDC N II F F L T
Sbjct: 1445 YWNEGMNYWETDCGNFYGAIIYFCSFYLIIT 1475
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 120 YYSFRSSFWKTDCINNLR*IISFLRFVLPTT 28
Y++ ++W+TDC N II F F L T
Sbjct: 1503 YWNEGMNYWETDCGNFYGAIIYFCSFYLIIT 1533
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 120 YYSFRSSFWKTDCINNLR*IISFLRFVLPTT 28
Y++ ++W+TDC N II F F L T
Sbjct: 1556 YWNEGMNYWETDCGNFYGAIIYFCSFYLIIT 1586
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 120 YYSFRSSFWKTDCINNLR*IISFLRFVLPTT 28
Y++ ++W+TDC N II F F L T
Sbjct: 1475 YWNEGMNYWETDCGNFYGAIIYFCSFYLIIT 1505
>AC024746-3|AAF60399.2| 160|Caenorhabditis elegans Hypothetical
protein Y110A2AL.6 protein.
Length = 160
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -1
Query: 283 SLSAVLVFFDLIFLNSSQSPS-IRFMCLSKALNVPMKVRESCNITLTR*LMC 131
++ + D++ SS SPS +F+ +SK ++P + RE + T +MC
Sbjct: 92 AIGKATLLLDVVLEKSSSSPSAYKFVSISKQ-SIPSQRREIPDCFYTLLIMC 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,916,938
Number of Sequences: 27780
Number of extensions: 105902
Number of successful extensions: 225
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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