Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O19
         (286 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   3.0  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   3.0  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              19   9.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     19   9.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    19   9.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    19   9.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    19   9.0  

>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 183 GTFKAFDKHMNLILGDCEELRKIKSKN 263
           G FK  DKH     GD + L  +   N
Sbjct: 74  GGFKKTDKHPPKDFGDVDSLGNLDPAN 100


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 183 GTFKAFDKHMNLILGDCEELRKIKSKN 263
           G FK  DKH     GD + L  +   N
Sbjct: 90  GGFKKTDKHPPKDFGDVDSLGNLDPAN 116


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 129 VAFYYSFRSSFWKTDCIN 76
           V+F  +  + FW  DC N
Sbjct: 108 VSFTTTVSARFWLMDCRN 125


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 229 SPSIRFMCLSKAL 191
           SP +RF CLS  L
Sbjct: 270 SPYLRFGCLSTRL 282


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 242 QFFTVSEY*IHVFIESFECTYEGTR 168
           Q+F +     H+ IESF  T    R
Sbjct: 143 QYFPMDRQLCHIEIESFGYTMRDIR 167


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 242 QFFTVSEY*IHVFIESFECTYEGTR 168
           Q+F +     H+ IESF  T    R
Sbjct: 143 QYFPMDRQLCHIEIESFGYTMRDIR 167


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 242 QFFTVSEY*IHVFIESFECTYEGTR 168
           Q+F +     H+ IESF  T    R
Sbjct: 82  QYFPMDRQLCHIEIESFGYTMRDIR 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,919
Number of Sequences: 438
Number of extensions: 1391
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)