Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_O18
(303 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 119 8e-29
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 66 1e-12
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 46 1e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 36 0.001
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 36 0.001
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 35 0.002
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 30 0.065
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 0.61
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 25 2.4
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 3.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 3.2
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 24 4.3
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 24 5.6
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 23 7.5
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 23 7.5
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 23 9.9
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 23 9.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 119 bits (287), Expect = 8e-29
Identities = 54/63 (85%), Positives = 59/63 (93%)
Frame = +1
Query: 115 DEEVAALVVDNGSGMCKAGFAGDDAPRAVXFSNVGRPRHQGVMVGMGQKDSYVGDEAQSR 294
+EE+AALV+DNGSGMCKAGFAGDDAPRAV S VGRPRH G+MVGMGQKDSYVGDEAQS+
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 295 RGI 303
RGI
Sbjct: 62 RGI 64
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 66.1 bits (154), Expect = 1e-12
Identities = 30/57 (52%), Positives = 40/57 (70%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVXFSNVGRPRHQGVMVGMGQKDSYVGDEAQSRRGI 303
+ +DNGSG KAGFAGDD P+ + + VGR +H+ VM QKD +VG EAQ+ RG+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGL 68
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 46.0 bits (104), Expect = 1e-06
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = +1
Query: 121 EVAALVVDNGSGMCKAGFAGDDAPRAVXFSNVGRP--RHQGVMVGMGQKDSYVGDEAQSR 294
E A +V+DNG+G K G+A D+ PR S VGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 295 RGI 303
R +
Sbjct: 62 RSL 64
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 36.3 bits (80), Expect = 0.001
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVXFSNVGRPRHQGVMVGMGQKDSYVGDEAQ 288
EE+ +LV+D GS + G+AG+++P + P + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTIL------PSYYGVRSDVTGRNKYVVDELQ 58
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 36.3 bits (80), Expect = 0.001
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVXFSNVGRPRHQGVMVG--MGQKDSYVGDE 282
+++DNG+G K G+AG+DAP V F V R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYV-FPTVIATRSAGASSGPAVSSKPSYMASK 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 35.1 bits (77), Expect = 0.002
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVXFSNVG 219
+EV+A+V+D GS + GF+G+D P+ V S G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 30.3 bits (65), Expect = 0.065
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVXFSNVGRPR 228
LV+DNGS +AG+ G+ P+ V + V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 27.1 bits (57), Expect = 0.61
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +1
Query: 145 NGSGMCKAGFAGDDAPRAVXFSNVGRPRHQGVMVGMG-----QKDSYVGDEAQSRR 297
N +GM + R FS+VG + VG Q+DSY+ D++ S R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 25.0 bits (52), Expect = 2.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 154 GMCKAGFAGDDAPRAVXFSNVGRPRHQGVMVGMGQKDS 267
G FA +AP + +N +PR QG V G+ S
Sbjct: 649 GHIAKSFALREAPGKISGANSSKPRKQGGSVDKGKSKS 686
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 3.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAG 180
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 3.2
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = -2
Query: 275 PT*ESF*PM-PTMTPW*RGRPTFEKXTARGASSPAKPALHIPDPLSTTNAATSSS 114
PT S P+ PT+ P P S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 24.2 bits (50), Expect = 4.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 165 FAHSGPIVYDQRGNFLV 115
+ HS PI+YD+ G+ +V
Sbjct: 162 YTHSQPILYDRDGSLIV 178
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/45 (22%), Positives = 21/45 (46%)
Frame = -1
Query: 243 HDALVTRSPHVRKXYGAGSVVSRETGFAHSGPIVYDQRGNFLVAH 109
+ AL + + + GS+ R+ G ++ +V+D G + H
Sbjct: 108 YQALSSMAKDTKTYLFGGSIPERKDGKLYNTAMVFDPSGKLIAVH 152
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 23.4 bits (48), Expect = 7.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 164 LHIPDPLSTTNAATSSSHI 108
+H PD LS N++ S +H+
Sbjct: 369 IHYPDDLSYFNSSRSKAHV 387
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 23.4 bits (48), Expect = 7.5
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +2
Query: 125 LPRWS*TMGPECAKPVSRETTLPAPYXFRTW 217
L W T P+C P +RET + +W
Sbjct: 481 LETWMKTTCPKCHGPATRETDTMDTFVDSSW 511
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 219 ATSSPGRHGRHGSEG 263
ATS P RH H S G
Sbjct: 232 ATSKPSRHASHSSIG 246
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -1
Query: 168 GFAHSG-PIVYDQRGNFLVAH 109
G+ SG P+V D R N+L+ +
Sbjct: 649 GYDFSGYPVVLDSRSNYLIGY 669
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,132,190
Number of Sequences: 5004
Number of extensions: 19033
Number of successful extensions: 57
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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