Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_O18
(303 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0450 - 21356877-21356942,21357482-21358095,21358173-213585... 107 1e-24
01_06_1455 + 37504175-37504231,37504357-37504750,37504865-375054... 107 2e-24
12_01_0409 - 3230853-3230918,3231372-3231994,3232454-3232847,323... 105 7e-24
11_01_0403 + 3059650-3059709,3059807-3060200,3060275-3060930,306... 105 7e-24
10_08_0597 + 19089616-19089675,19089789-19090182,19090451-190910... 105 7e-24
05_01_0047 - 323097-323162,323287-323900,324233-324626,324718-32... 105 7e-24
03_06_0585 - 34912159-34912224,34912634-34913247,34913350-349137... 105 7e-24
03_05_0926 + 28871800-28871859,28871943-28872336,28872586-288731... 105 7e-24
01_07_0285 - 42476767-42476832,42476990-42477603,42477821-424782... 105 7e-24
12_02_1282 + 27528159-27529148,27529549-27529614 104 2e-23
08_01_0254 + 2078380-2078392,2078487-2078578,2079579-2079698,207... 44 2e-05
08_02_0441 - 17196352-17196536,17196780-17196906,17198018-171981... 36 0.006
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238... 36 0.008
01_01_1170 - 9318332-9318461,9318551-9318613,9318694-9318744,931... 35 0.014
08_01_0194 - 1603702-1603782,1603970-1604062,1604203-1604328,160... 30 0.30
02_04_0473 + 23197294-23197340,23197443-23197680,23197792-231980... 30 0.30
06_03_0013 - 15393830-15394060,15394238-15394672 28 1.6
02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504 28 1.6
12_01_0843 + 7891622-7892524 27 2.1
01_03_0156 + 13279354-13279479,13279722-13279790,13280102-132802... 27 2.1
04_04_1515 + 34117383-34117732,34117833-34117918,34118227-341182... 27 3.7
09_06_0322 - 22329897-22330078,22330569-22331928 26 4.9
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200... 26 4.9
04_04_1358 + 32869222-32869306,32869947-32870008,32870301-328703... 26 4.9
04_04_0240 + 23851859-23851917,23852018-23852087,23852177-238533... 26 4.9
03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477 26 4.9
02_02_0088 - 6655493-6655601,6656057-6656259,6656382-6656594,665... 26 4.9
09_06_0323 - 22337217-22337450,22338263-22339204 26 6.5
01_06_0624 - 30683249-30684631 26 6.5
05_06_0227 + 26565169-26566380 25 8.6
04_04_0692 - 27307349-27307728,27308381-27308546 25 8.6
>05_04_0450 -
21356877-21356942,21357482-21358095,21358173-21358566,
21358648-21358704
Length = 376
Score = 107 bits (258), Expect = 1e-24
Identities = 49/65 (75%), Positives = 56/65 (86%)
Frame = +1
Query: 109 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVXFSNVGRPRHQGVMVGMGQKDSYVGDEAQ 288
M DE++ +V DNG+GM KAGFAGDDAPRAV S VGRPRH GVMVGMGQKD+YVGDEAQ
Sbjct: 1 MADEDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQ 60
Query: 289 SRRGI 303
++RGI
Sbjct: 61 AKRGI 65
>01_06_1455 +
37504175-37504231,37504357-37504750,37504865-37505478,
37506021-37506086
Length = 376
Score = 107 bits (257), Expect = 2e-24
Identities = 49/65 (75%), Positives = 56/65 (86%)
Frame = +1
Query: 109 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVXFSNVGRPRHQGVMVGMGQKDSYVGDEAQ 288
M +E++ +V DNG+GM KAGFAGDDAPRAV S VGRPRH GVMVGMGQKD+YVGDEAQ
Sbjct: 1 MAEEDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQ 60
Query: 289 SRRGI 303
S+RGI
Sbjct: 61 SKRGI 65
>12_01_0409 -
3230853-3230918,3231372-3231994,3232454-3232847,
3233000-3233059
Length = 380
Score = 105 bits (252), Expect = 7e-24
Identities = 49/62 (79%), Positives = 54/62 (87%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVXFSNVGRPRHQGVMVGMGQKDSYVGDEAQSRR 297
E++ LV DNG+GM KAGFAGDDAPRAV S VGRPRH GVMVGMGQKD+YVGDEAQS+R
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 298 GI 303
GI
Sbjct: 65 GI 66
>11_01_0403 +
3059650-3059709,3059807-3060200,3060275-3060930,
3060979-3061044
Length = 391
Score = 105 bits (252), Expect = 7e-24
Identities = 49/62 (79%), Positives = 54/62 (87%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVXFSNVGRPRHQGVMVGMGQKDSYVGDEAQSRR 297
E++ LV DNG+GM KAGFAGDDAPRAV S VGRPRH GVMVGMGQKD+YVGDEAQS+R
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 298 GI 303
GI
Sbjct: 65 GI 66
>10_08_0597 +
19089616-19089675,19089789-19090182,19090451-19091064,
19091160-19091225
Length = 377
Score = 105 bits (252), Expect = 7e-24
Identities = 49/62 (79%), Positives = 54/62 (87%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVXFSNVGRPRHQGVMVGMGQKDSYVGDEAQSRR 297
E++ LV DNG+GM KAGFAGDDAPRAV S VGRPRH GVMVGMGQKD+YVGDEAQS+R
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 298 GI 303
GI
Sbjct: 65 GI 66
>05_01_0047 -
323097-323162,323287-323900,324233-324626,324718-324777
Length = 377
Score = 105 bits (252), Expect = 7e-24
Identities = 49/62 (79%), Positives = 54/62 (87%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVXFSNVGRPRHQGVMVGMGQKDSYVGDEAQSRR 297
E++ LV DNG+GM KAGFAGDDAPRAV S VGRPRH GVMVGMGQKD+YVGDEAQS+R
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 298 GI 303
GI
Sbjct: 65 GI 66
>03_06_0585 -
34912159-34912224,34912634-34913247,34913350-34913734,
34913824-34913883
Length = 374
Score = 105 bits (252), Expect = 7e-24
Identities = 49/62 (79%), Positives = 54/62 (87%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVXFSNVGRPRHQGVMVGMGQKDSYVGDEAQSRR 297
E++ LV DNG+GM KAGFAGDDAPRAV S VGRPRH GVMVGMGQKD+YVGDEAQS+R
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 298 GI 303
GI
Sbjct: 65 GI 66
>03_05_0926 +
28871800-28871859,28871943-28872336,28872586-28873199,
28873281-28873346
Length = 377
Score = 105 bits (252), Expect = 7e-24
Identities = 49/62 (79%), Positives = 54/62 (87%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVXFSNVGRPRHQGVMVGMGQKDSYVGDEAQSRR 297
E++ LV DNG+GM KAGFAGDDAPRAV S VGRPRH GVMVGMGQKD+YVGDEAQS+R
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 298 GI 303
GI
Sbjct: 65 GI 66
>01_07_0285 -
42476767-42476832,42476990-42477603,42477821-42478214,
42478301-42478360
Length = 377
Score = 105 bits (252), Expect = 7e-24
Identities = 49/62 (79%), Positives = 54/62 (87%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVXFSNVGRPRHQGVMVGMGQKDSYVGDEAQSRR 297
E++ LV DNG+GM KAGFAGDDAPRAV S VGRPRH GVMVGMGQKD+YVGDEAQS+R
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 298 GI 303
GI
Sbjct: 65 GI 66
>12_02_1282 + 27528159-27529148,27529549-27529614
Length = 351
Score = 104 bits (249), Expect = 2e-23
Identities = 48/62 (77%), Positives = 54/62 (87%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVXFSNVGRPRHQGVMVGMGQKDSYVGDEAQSRR 297
+++ LV DNG+GM KAGFAGDDAPRAV S VGRPRH GVMVGMGQKD+YVGDEAQS+R
Sbjct: 5 DDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 298 GI 303
GI
Sbjct: 65 GI 66
>08_01_0254 +
2078380-2078392,2078487-2078578,2079579-2079698,
2079924-2080097,2080184-2080257,2080847-2080927,
2081306-2081366,2081437-2081486,2082278-2082332,
2082599-2082676,2082757-2082810,2083703-2083756,
2083846-2083906,2084229-2084280,2085118-2085184,
2085393-2085452,2085546-2085608,2085752-2085814,
2086337-2086401,2086620-2086688,2086742-2086847
Length = 503
Score = 44.4 bits (100), Expect = 2e-05
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAV 201
+EV+A+V+D GS CKAG+AGDD P+AV
Sbjct: 5 DEVSAIVIDVGSYSCKAGYAGDDTPKAV 32
>08_02_0441 -
17196352-17196536,17196780-17196906,17198018-17198101,
17198282-17198348,17198575-17198633,17199211-17199336,
17199406-17199474,17199545-17199653,17199692-17199760,
17199876-17199979,17200518-17200567,17200696-17200774,
17200867-17200938,17201083-17201217,17201311-17201421,
17202088-17202129
Length = 495
Score = 35.9 bits (79), Expect = 0.006
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVXFSNVGRP 225
+V DNG+G K GFAG++ P +V VGRP
Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRP 37
>01_01_0292 -
2387653-2387711,2388061-2388684,2388814-2389104,
2389338-2389390,2390496-2390968,2391090-2391432,
2391793-2391911,2392081-2392512,2392657-2392747,
2392833-2392942,2393681-2393875,2394581-2394622,
2395144-2395268,2395856-2395926,2396047-2396147
Length = 1042
Score = 35.5 bits (78), Expect = 0.008
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVXFSNVGRPRHQGVMVGMGQKDSYVGD 279
+V+DNG+ + G+AG+ PR + V RPRH+ G+ + VGD
Sbjct: 22 IVIDNGASTFRIGWAGEAEPRVAFRNIVQRPRHR----SSGETVTVVGD 66
>01_01_1170 -
9318332-9318461,9318551-9318613,9318694-9318744,
9318837-9318921,9319005-9319068,9319139-9319340,
9319808-9320502
Length = 429
Score = 34.7 bits (76), Expect = 0.014
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVXFSNVGRP 225
+V+DNG G+ KAGF GD P AV + + +P
Sbjct: 8 VVLDNGGGLLKAGFGGDMNPTAVVPNCMAKP 38
>08_01_0194 -
1603702-1603782,1603970-1604062,1604203-1604328,
1604403-1604513,1604989-1605108,1605665-1605757,
1606024-1606157,1606503-1606530,1606821-1607075,
1607167-1607401,1608147-1608193
Length = 440
Score = 30.3 bits (65), Expect = 0.30
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 130 ALVVDNGSGMCKAGFAGDDAP 192
A+V+DNG+G K GF+G+ P
Sbjct: 8 AVVIDNGTGYSKLGFSGNSEP 28
>02_04_0473 +
23197294-23197340,23197443-23197680,23197792-23198016,
23198616-23198762,23198827-23198961,23199415-23199507,
23199925-23200044,23200303-23200413,23200486-23200611,
23200731-23200829,23201024-23201104
Length = 473
Score = 30.3 bits (65), Expect = 0.30
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 130 ALVVDNGSGMCKAGFAGDDAP 192
A+V+DNG+G K GFAG+ P
Sbjct: 8 AVVIDNGTGYTKMGFAGNVEP 28
>06_03_0013 - 15393830-15394060,15394238-15394672
Length = 221
Score = 27.9 bits (59), Expect = 1.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 218 GDLVTRASWSAWVRRTP 268
G + R +W+AW RRTP
Sbjct: 163 GTVAKRRAWAAWTRRTP 179
>02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504
Length = 681
Score = 27.9 bits (59), Expect = 1.6
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Frame = +1
Query: 106 SMCDEEVAALVVD---NGSGMCKAGFAGD------DAPRAVXFSNVGRPRHQGVMVGMGQ 258
S CD E A + + NG+G C + D +A + + P H G+M M
Sbjct: 163 SRCDIEKAPIAIGQPCNGNGCCSIKLSRDMRGFQSTLVQAEAAAQISDPLHHGIMAFMSY 222
Query: 259 KDSYV 273
D YV
Sbjct: 223 TDYYV 227
>12_01_0843 + 7891622-7892524
Length = 300
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAV 201
E+V ++ D GSG +AG GD AP V
Sbjct: 170 EDVTSVWRDGGSGAARAGDDGDGAPAFV 197
>01_03_0156 +
13279354-13279479,13279722-13279790,13280102-13280272,
13280358-13280464,13281332-13281437,13281540-13281586,
13283429-13283747,13283917-13284006,13284095-13284157,
13284303-13284377,13285379-13285441,13286677-13286700,
13286926-13286978,13287687-13287861
Length = 495
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 158 CAKPVSRETTLPAPYXFRTWGDLVTRA 238
CA+P++ + + PY FR G+L+ +A
Sbjct: 17 CARPIAVDHRIKLPYYFRIAGNLLRQA 43
>04_04_1515 +
34117383-34117732,34117833-34117918,34118227-34118297,
34118457-34118524,34118692-34118753,34119010-34119107,
34119545-34119626,34119935-34120077,34120233-34120381,
34120461-34120594,34120714-34120832,34120926-34121014,
34121398-34121515
Length = 522
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 130 ALVVDNGSGMCKAGFAGDDAP--RAVXFSNVG 219
+++VD GSG CK G++ AP R F G
Sbjct: 141 SIIVDGGSGYCKYGWSKYAAPSGRCATFLEFG 172
>09_06_0322 - 22329897-22330078,22330569-22331928
Length = 513
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 303 DTPPALCLITYVGVLLTHADHDALV 229
D PP+L IT+ G ++T +H+ +
Sbjct: 133 DIPPSLTRITHPGPMITFTNHEVAI 157
>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
22220149-22220365,22220798-22221021,22221559-22221738,
22221875-22222013,22222107-22222255,22223394-22223505,
22223998-22224506,22224661-22224784,22224904-22225178,
22225507-22225626,22225707-22225769,22225861-22226052,
22226381-22226440,22226535-22226738,22226926-22227051,
22227093-22227254,22227357-22227476,22227665-22227820,
22227895-22227957,22228041-22228168,22228524-22228920,
22229442-22229544,22229646-22229776,22230096-22230167,
22230472-22230553,22231083-22231190,22231288-22231429,
22231659-22231698,22231746-22231876,22232215-22232301,
22232395-22232605,22232687-22232741,22232836-22232927,
22233011-22233071,22233361-22233719
Length = 2010
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 124 VAALVVDNGSGMCKAGFAGDDAPRAVXFSNVG 219
V + V N +G A G+ RAV FSN G
Sbjct: 1185 VETVEVQNSTGKLSAKTVGNSTMRAVAFSNEG 1216
>04_04_1358 + 32869222-32869306,32869947-32870008,32870301-32870393,
32870640-32870761,32873139-32873167,32873586-32873891,
32873977-32874035,32874148-32874279,32874414-32874455,
32874560-32875093,32875189-32875379,32875538-32876027,
32876273-32876335,32876704-32876805,32876895-32877215,
32877294-32877386,32877484-32877585,32877718-32877822,
32877933-32878066,32878429-32878612,32879226-32879357,
32879447-32879559,32879628-32879709,32880328-32881992
Length = 1746
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 261 LLTHADHDALVTRSPHVRKXYGAGSVVSRETGFAHS 154
+L HA D V R P Y G R+ G+AHS
Sbjct: 1512 ILPHAI-DTRVPRGPRSTLYYRTGHTFQRKQGYAHS 1546
>04_04_0240 +
23851859-23851917,23852018-23852087,23852177-23853394,
23853504-23854040
Length = 627
Score = 26.2 bits (55), Expect = 4.9
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 106 SMCDEEVAALVVDNGSGMCKAGFAGDDAP-RAVXFSNVGRPRHQGVMVGM 252
S C + VAAL V + SG AG + P A S +G + VMV +
Sbjct: 159 SRCVDAVAALAVGDASGAVPAGSSSSSPPWWARDISELGVDLYWRVMVAV 208
>03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477
Length = 668
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 254 PMPTMTPW*RGRPTFEKXTARGASSPAKPALHIPDPLSTTNAATSSS 114
PMP P ++ A A AKPA +P +S A T+++
Sbjct: 546 PMPEKPRQTESAPCAKRSMASKAKPKAKPAATVPSMMSRKAATTTTT 592
>02_02_0088 -
6655493-6655601,6656057-6656259,6656382-6656594,
6656683-6656792,6656878-6656981,6657076-6657245,
6657337-6657501,6657584-6657702,6657853-6657940,
6658035-6658140,6658235-6658323,6658461-6658604,
6658715-6658807,6658906-6658972,6659116-6659228,
6659306-6659401,6659524-6659724
Length = 729
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +2
Query: 68 YLFNRTI*LKTNSQCATRKLPRWS*TMGPECAKPVSRETTLPAPYXFRTWGDLVTRASWS 247
Y N + ++ N Q LP WS ++ P+C V T+ P +V R +W
Sbjct: 390 YHMNTAVKVRFNGQ--QYNLPAWSISILPDCKTAVFNTATVKEPTLMPKMNPVV-RFAWQ 446
Query: 248 AWVRRT 265
++ T
Sbjct: 447 SYSEDT 452
>09_06_0323 - 22337217-22337450,22338263-22339204
Length = 391
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 303 DTPPALCLITYVGVLLTHADHDALV 229
D PP+L IT+ G ++T +H+ +
Sbjct: 321 DIPPSLTRITHPGPMITFTNHEVSI 345
>01_06_0624 - 30683249-30684631
Length = 460
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 179 ETTLPAPYXFRTWGDLVTRASWSAWVRRTPT*VMRHRAGG 298
E+ LP + RTWG + SW+ V V+RH A G
Sbjct: 309 ESLLPEGFLDRTWGRGLVLPSWAPQVE-----VLRHPATG 343
>05_06_0227 + 26565169-26566380
Length = 403
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 157 MCKAGFAGDDAPRAVXFSNVGRPRHQG 237
+C+ F GDD P FSN+ R + +G
Sbjct: 234 VCQPMFHGDDPPMVPVFSNLVRFKPRG 260
>04_04_0692 - 27307349-27307728,27308381-27308546
Length = 181
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 200 TARGASSPAKPALHIPDPLSTTNAATSSS 114
+A G + AKP+ DP +TT TSS+
Sbjct: 127 SAAGGTRLAKPSSSDADPTTTTTTRTSSA 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,447,866
Number of Sequences: 37544
Number of extensions: 161545
Number of successful extensions: 551
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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