Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_O15
(345 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0029 + 11724581-11724583,11726413-11726610,11726874-117270... 30 0.56
07_02_0001 + 11646955-11647085,11647169-11647271,11647369-11647407 29 0.74
08_02_1082 + 24225592-24226422 29 0.98
02_05_0999 + 33405982-33408279,33408356-33408466,33408551-334087... 29 0.98
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619... 29 0.98
12_02_0875 - 23920023-23920967,23921045-23921599,23921678-239220... 28 1.7
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 28 1.7
10_08_0605 + 19158167-19158309,19158726-19158834,19159099-191592... 28 2.3
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662... 27 5.2
04_04_0017 + 22176759-22177406 27 5.2
09_02_0053 - 3665202-3665900,3666109-3666359,3666612-3666938,366... 26 6.9
08_02_0911 + 22530370-22530497,22531083-22531126,22531224-225312... 26 6.9
01_01_1212 + 9763949-9764412,9765183-9765252,9765356-9765457 26 6.9
02_01_0322 + 2192257-2192310,2192452-2192730,2192768-2192921,219... 26 9.1
>09_03_0029 +
11724581-11724583,11726413-11726610,11726874-11727038,
11727217-11727283,11727645-11727812,11728070-11728194,
11728288-11728446,11728552-11728714,11728795-11728920,
11729000-11729083,11729161-11729528,11729613-11729813,
11729909-11730018,11730113-11730197,11730360-11730488,
11730580-11730667,11730805-11730893,11730968-11731267
Length = 875
Score = 29.9 bits (64), Expect = 0.56
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = -3
Query: 280 GIDRRRNISWGRMSAKLGISFHNGAKRLKGDMLIHGNERSSSVIEVIGGGMSD 122
G+ + ++ W ++ K + F+ K LKG +L+ E + + + GG+ D
Sbjct: 640 GVCPQHDLLWEPLTGKEHLFFYGRLKNLKGAVLVKAVEDALKSVNLFHGGVGD 692
>07_02_0001 + 11646955-11647085,11647169-11647271,11647369-11647407
Length = 90
Score = 29.5 bits (63), Expect = 0.74
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 223 SFHNGAKRLKGDMLIHGNERSSSVIEVIGGGMSD 122
SFH G R G M+ GNER ++ GG D
Sbjct: 44 SFHGGGLRWTGSMVQEGNERPCCLVRGWGGDEVD 77
>08_02_1082 + 24225592-24226422
Length = 276
Score = 29.1 bits (62), Expect = 0.98
Identities = 18/49 (36%), Positives = 20/49 (40%)
Frame = +3
Query: 117 DRSDIPPPITSITDDDLSFPWMSISPFSLFAPLWKLIPSFADIRPQDIF 263
D SD P S+ D DL F W P A W FAD P +F
Sbjct: 226 DFSDYPSITKSLADPDLHFEWP--PPAFDMASYWPAGAGFADPDPTAVF 272
>02_05_0999 +
33405982-33408279,33408356-33408466,33408551-33408703,
33408870-33409033,33409113-33409210,33409296-33409474,
33409588-33409675,33410285-33410451
Length = 1085
Score = 29.1 bits (62), Expect = 0.98
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = -1
Query: 339 PSYFHFQIFFPVIFHVDDYLELIVVGIYPGAVCQRN*GSVSIMGRRG 199
P Y H+++ P HVD+ +V + PGAV Q+N G +GR G
Sbjct: 253 PKYRHYEVHSPQ--HVDN-----LVWLPPGAVIQQNAGFPGNLGRPG 292
>02_02_0028 +
6196453-6196512,6196936-6197320,6197843-6197925,
6198060-6198183,6198404-6198523,6198595-6198755,
6198999-6199157,6199272-6199434,6199604-6199729,
6199775-6199900,6200400-6200764,6201204-6201404,
6201685-6201794,6201919-6202003,6202553-6202681,
6202763-6202868,6202984-6203072,6203172-6203474
Length = 964
Score = 29.1 bits (62), Expect = 0.98
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = -3
Query: 280 GIDRRRNISWGRMSAKLGISFHNGAKRLKGDMLIHGNERSSSVIEVIGGGMSD 122
G+ + ++ W ++ + + F+ K L+G L E+S + + GG++D
Sbjct: 722 GVCPQHDLLWETLTGREHLLFYGRLKNLRGAPLSQAIEKSLKSVRLFAGGIAD 774
>12_02_0875 -
23920023-23920967,23921045-23921599,23921678-23922083,
23922175-23922452
Length = 727
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Frame = +2
Query: 41 HNVFTACSS---GLWFRPPSGGGGLPGFR 118
H +F C S W R +GGGG GFR
Sbjct: 339 HRIFKLCGSPGDAYWRRAAAGGGGGAGFR 367
>12_01_0797 +
7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 138 PITSITDDDLSFPWMSISPFSLFAPLWKLI 227
P TS+ +++S P+M+I+ FS W L+
Sbjct: 680 PSTSLPMEEMSEPYMAINTFSQLLTQWSLV 709
>10_08_0605 +
19158167-19158309,19158726-19158834,19159099-19159224,
19159388-19159543,19159623-19159805,19159904-19160020,
19160528-19160581,19160661-19160732,19160947-19161058,
19161188-19161284,19161434-19161528,19162093-19162167,
19162307-19162390,19162602-19162700,19163167-19163207
Length = 520
Score = 27.9 bits (59), Expect = 2.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 68 GLWFRPPSGGGGLPG 112
GLW PP+GGGG G
Sbjct: 27 GLWLPPPTGGGGRLG 41
>12_02_0035 -
12563503-12564405,12564494-12565611,12565709-12566239,
12566337-12567153
Length = 1122
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 138 PITSITDDDLSFPWMSISPFSLFAPLWKLIPSFADIRPQ 254
P++ + D D F + P ++ P L P FA I+P+
Sbjct: 182 PLSLLNDKDCPFSFSGKKPKTVSEPSVSLSPEFAAIQPR 220
>04_04_0017 + 22176759-22177406
Length = 215
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 271 DQFQVVVNVKDYRKEDLKVKV 333
D +VVV+V RKEDL+V+V
Sbjct: 85 DAHEVVVDVPGMRKEDLRVEV 105
>09_02_0053 - 3665202-3665900,3666109-3666359,3666612-3666938,
3667017-3667242,3667328-3667846,3668789-3668863,
3668963-3669052,3669142-3669222,3672176-3672222,
3672620-3672685,3673834-3673930,3673983-3674046,
3674160-3674278,3674448-3674563,3676675-3676708
Length = 936
Score = 26.2 bits (55), Expect = 6.9
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +3
Query: 117 DRSDIPPPITSIT---DDDLSFPWMSISPFSLFAPLWKLIPSFADIRPQDIFR 266
D DI ITS D+L+ P + +P APLW ++ A + P+D R
Sbjct: 845 DDDDIDVLITSTLVGIKDNLAKPIQTAAPQDPNAPLWDMLKKIA-LEPEDKMR 896
>08_02_0911 +
22530370-22530497,22531083-22531126,22531224-22531267,
22531428-22531946,22532032-22532257,22532336-22532662,
22532915-22533165,22533374-22534072
Length = 745
Score = 26.2 bits (55), Expect = 6.9
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +3
Query: 117 DRSDIPPPITSIT---DDDLSFPWMSISPFSLFAPLWKLIPSFADIRPQDIFR 266
D DI ITS D+L+ P + +P APLW ++ A + P+D R
Sbjct: 654 DDDDIDVLITSTLVGIKDNLAKPIQTAAPQDPNAPLWDMLKKIA-LEPEDKMR 705
>01_01_1212 + 9763949-9764412,9765183-9765252,9765356-9765457
Length = 211
Score = 26.2 bits (55), Expect = 6.9
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 68 GLWFRPPSGGGG 103
G W RPP GGGG
Sbjct: 116 GTWRRPPPGGGG 127
>02_01_0322 +
2192257-2192310,2192452-2192730,2192768-2192921,
2193010-2193602
Length = 359
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 83 PPSGGGGLPGFRQIR 127
PPSGGGG GFR ++
Sbjct: 249 PPSGGGGDGGFRGLQ 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,960,976
Number of Sequences: 37544
Number of extensions: 169496
Number of successful extensions: 511
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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