Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O15
         (345 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77657-3|CAB01147.1|  147|Caenorhabditis elegans Hypothetical pr...    29   0.89 
Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical pr...    28   2.1  
U39850-1|AAA81055.3|  618|Caenorhabditis elegans Hypothetical pr...    27   3.6  
U97405-4|AAB53009.1|  342|Caenorhabditis elegans Hypothetical pr...    26   6.3  
L16685-3|AAA28169.3|  321|Caenorhabditis elegans Hypothetical pr...    26   6.3  

>Z77657-3|CAB01147.1|  147|Caenorhabditis elegans Hypothetical
           protein F08H9.4 protein.
          Length = 147

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 238 LTYGPRIYSDDDQFQVVVNVKDYRKEDLKVKVTG 339
           +T    I + +D+F V +NV +++ E+LKV + G
Sbjct: 39  MTDDSEIMNSNDKFAVNLNVSNFKPEELKVNLEG 72


>Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical
           protein C16C10.3 protein.
          Length = 1032

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 196 SASSPHYGN*SLVSLTYGPR-IYSDDDQFQVVVNVKDYRKEDLK 324
           S  S H+      +  Y P  +Y+ DDQ +V + + D+ KE+ K
Sbjct: 133 SGKSHHFLAYDCAATLYLPEGVYTGDDQEEVTLTIDDFPKEEWK 176


>U39850-1|AAA81055.3|  618|Caenorhabditis elegans Hypothetical
           protein F52C9.5 protein.
          Length = 618

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 193 PSASSPHYGN*SLVSLTYGPRIYSDDDQFQVVVNVKDYRKEDLKVKVTG 339
           PS+ S   G  S    T G  ++S DDQ  VV +V +  K  ++ K+ G
Sbjct: 249 PSSDSCPRGKQSTFLRTEGFELFSHDDQELVVGDVAECAKACIENKING 297


>U97405-4|AAB53009.1|  342|Caenorhabditis elegans Hypothetical
           protein T09B4.7 protein.
          Length = 342

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 244 YGPRIYSDDDQFQVVVNVKDYRKEDLKVKV 333
           YG    S DD  ++ V  + + K  LK+++
Sbjct: 72  YGTVFLSQDDDIKIAVKTEKFSKSQLKIEI 101


>L16685-3|AAA28169.3|  321|Caenorhabditis elegans Hypothetical
           protein ZC21.3 protein.
          Length = 321

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 187 YHPSASSPHYGN*SLVSLTYGP 252
           Y PS+SSP Y N    S TY P
Sbjct: 71  YQPSSSSPQYSN-GAPSTTYSP 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,144,189
Number of Sequences: 27780
Number of extensions: 130819
Number of successful extensions: 317
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)