Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O15
         (345 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   1.3  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   2.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   2.3  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   3.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   3.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   7.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   9.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   9.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.5  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +2

Query: 2   RHEASCRCTRHKHHNVFTACS 64
           R   SC     KHHN    CS
Sbjct: 116 RDSLSCWLQMTKHHNFIKVCS 136


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 195 RVICSSTGMRGHHQLSR 145
           RV+C + G  G H L R
Sbjct: 164 RVLCMTDGKEGMHTLER 180


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 71  LWFRPPSGGGGLPGFRQ 121
           LW  PP  G   P F Q
Sbjct: 388 LWIVPPISGSATPVFHQ 404


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 210 PLWKLIPSFA 239
           PLWKL+P+ A
Sbjct: 258 PLWKLLPTCA 267


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = +2

Query: 5   HEASCRCTRHKHHNVFTACSSG 70
           H  +C+  R  HH   ++ ++G
Sbjct: 401 HHPNCKINRKVHHTTSSSSAAG 422


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 259 ISWGRMSAKLGISFHNGAKRLKGDMLIHGNERSSSVIEV 143
           I W  +    G S +  AKRL  D+L + N+    V+ V
Sbjct: 8   IMWIVLVLISGCSGNPDAKRLYDDLLSNYNKLVRPVVNV 46


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 300 FHVDDYLELIVVGIYPG 250
           +HV D+   I VG+  G
Sbjct: 263 YHVSDHKAAITVGVIMG 279


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +2

Query: 74   WFRPPSGGGGLPGFRQIRHTTSDNLD 151
            W    +GG  L G+     T   NLD
Sbjct: 1424 WKSGHNGGASLTGYTLHYRTAHGNLD 1449


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +2

Query: 74   WFRPPSGGGGLPGFRQIRHTTSDNLD 151
            W    +GG  L G+     T   NLD
Sbjct: 1420 WKSGHNGGASLTGYTLHYRTAHGNLD 1445


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,795
Number of Sequences: 438
Number of extensions: 1887
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)