Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_O14
(146 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0349 + 2521006-2522439 29 0.39
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015... 28 0.90
03_02_0847 + 11721847-11722294,11723043-11723108,11723276-117233... 28 1.2
08_02_0581 + 18986084-18986176,18986284-18986668,18986779-189868... 27 2.1
03_05_0095 - 20745639-20745785,20745880-20746065,20746286-207463... 26 3.6
02_04_0407 + 22645775-22645865,22645998-22646269 26 3.6
11_04_0424 - 17508609-17508669,17509132-17509450,17509675-175097... 26 4.8
03_05_0042 + 20180151-20180468,20181595-20181665,20182929-201830... 26 4.8
02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875 25 6.4
11_06_0752 - 26927573-26927680,26928061-26928363 25 8.4
06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769... 25 8.4
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 25 8.4
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 25 8.4
>07_01_0349 + 2521006-2522439
Length = 477
Score = 29.5 bits (63), Expect = 0.39
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 40 MSLISARIAGSVARRLPNAASQVSIVAVPAV 132
M + + G VARRLP AA+ V+I A P +
Sbjct: 197 MHRVMTMLLGRVARRLPRAATAVAINAFPGL 227
>10_08_0521 + 18500105-18500529,18501216-18501284,18501467-18501555,
18501726-18501838,18502023-18502124,18502576-18502663,
18502795-18503361,18503766-18504149,18504168-18504384,
18504466-18504548,18505174-18505256,18505796-18506032,
18506481-18506658,18506814-18507328,18507740-18507916,
18508385-18508768,18508885-18509031
Length = 1285
Score = 28.3 bits (60), Expect = 0.90
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 91 LANAWPRSRRYERRSATFSTNSSI 20
+ N WPR RR R A F +S+
Sbjct: 1184 IQNLWPRKRRLSERDAAFGLKTSV 1207
>03_02_0847 +
11721847-11722294,11723043-11723108,11723276-11723358,
11723585-11723673,11723783-11723906
Length = 269
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 50 SPLVSPAPWPGVCQMPLHRFRLSRCL 127
SP +PAPWPG LS CL
Sbjct: 38 SPWAAPAPWPGELDCTGALLNLSSCL 63
>08_02_0581 +
18986084-18986176,18986284-18986668,18986779-18986861,
18986966-18987110,18987823-18987951,18988047-18988171,
18988261-18988419,18988503-18988665,18988750-18988875,
18989110-18989471,18989572-18989772,18989873-18989982,
18990079-18990163,18990298-18990426,18990505-18990610,
18990688-18990776,18990885-18991184
Length = 929
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 53 PLVSPAPWPGVCQMPLHRFRLSR 121
P+ SP PWP + Q+P R R
Sbjct: 102 PIKSPTPWPALVQVPRPESRAVR 124
>03_05_0095 -
20745639-20745785,20745880-20746065,20746286-20746348,
20747255-20747331,20748692-20749121
Length = 300
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Frame = +2
Query: 35 GKCR*SPLVSPAPWPGVCQMP------LHRFRLSRCLPLLWPP 145
G+CR S ++S P P CQ P R ++ CL PP
Sbjct: 75 GRCRLSTVMSRVPPPPRCQTPSRTLESFGRHQIRSCLDTFTPP 117
>02_04_0407 + 22645775-22645865,22645998-22646269
Length = 120
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3
Query: 75 GQAFAKCRFTGFDCRGACRYCGLP 146
G + CR G+ RG CR C P
Sbjct: 81 GGGWHGCRCCGYGYRGGCRCCASP 104
>11_04_0424 -
17508609-17508669,17509132-17509450,17509675-17509786,
17510649-17510714,17510861-17511008,17511662-17511904,
17513226-17513426,17513745-17513883,17514532-17514889
Length = 548
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 38 KCR*SPLVSPAPWPGVCQMPLHR 106
+C +PL++PA W G Q P+ R
Sbjct: 471 QCALTPLLAPAWWDGQWQSPIPR 493
>03_05_0042 +
20180151-20180468,20181595-20181665,20182929-20183087,
20183598-20183664,20183913-20184008,20184687-20184733,
20185113-20185193,20185704-20185806,20185967-20186028,
20187188-20187302,20193191-20195087,20195206-20195492
Length = 1100
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +3
Query: 18 YILELVENVADLRSYRRLRGQAFAKC--RFTGFDCRGA 125
YIL+ SYRRLRG+ A F CRGA
Sbjct: 281 YILDSFPPPFSKTSYRRLRGRGAATAIPSFKKIKCRGA 318
>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
Length = 356
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 9 LHNYILELVENVA--DLRSYRRLRGQAFAKCRFTGFDCRGACRYCG 140
L +Y++E ++ A D Y R+RG + C F C+ CR G
Sbjct: 224 LGDYVIEYGDDDAGDDYEVYHRVRGNWWTSCIF----CKSFCRSSG 265
>11_06_0752 - 26927573-26927680,26928061-26928363
Length = 136
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 138 HSNGRHRDNRNL*SGIWQTPGHGAGDTSGDQRH 40
H HR +R+ SG W+T G + S D RH
Sbjct: 15 HERWMHRMDRSTPSGYWKTAGKASFVYSAD-RH 46
>06_02_0032 +
10775031-10775520,10775661-10776246,10776333-10776973,
10777270-10777973
Length = 806
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 96 GIWQTP--GHGAGDTSGDQRHFPLTLVYNYAD 7
G+WQ GH AGD+ ++P LV+ Y +
Sbjct: 47 GVWQDTEAGHLAGDSIIRDTYYPRYLVFFYCN 78
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 121 PRQSKPVKRHLANAWPRSRRYERRSATFSTNS 26
PR+ P R + PRSR RRS +T+S
Sbjct: 237 PRRRSPPARRERSPAPRSRSPRRRSPVKTTSS 268
>02_01_0014 -
87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 49 ISARIAGSVARRLPNAASQVSIVAVPAVT 135
++ A ++ R+LP+ AS+ + AVP +T
Sbjct: 235 VALSTAANICRKLPSDASEFVMEAVPLLT 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,529,967
Number of Sequences: 37544
Number of extensions: 76717
Number of successful extensions: 320
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 14,793,348
effective HSP length: 29
effective length of database: 13,704,572
effective search space used: 260386868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -