Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_O14
(146 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82051-2|CAB04816.1| 237|Caenorhabditis elegans Hypothetical pr... 26 3.2
U23514-10|AAK95879.1| 301|Caenorhabditis elegans Long protein 1... 26 3.2
U23514-9|AAC46538.1| 312|Caenorhabditis elegans Long protein 1,... 26 3.2
Z49129-1|CAA88962.1| 262|Caenorhabditis elegans Hypothetical pr... 26 4.2
U23514-11|AAM48531.1| 287|Caenorhabditis elegans Long protein 1... 26 4.2
AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear recep... 26 4.2
AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormo... 26 4.2
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 26 4.2
AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormo... 26 4.2
U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical p... 25 7.3
Z81115-4|CAB03294.2| 651|Caenorhabditis elegans Hypothetical pr... 25 9.7
>Z82051-2|CAB04816.1| 237|Caenorhabditis elegans Hypothetical
protein T23D5.3 protein.
Length = 237
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 52 SARIAGSVARRLPNAASQVSIVAVPAVTVAS 144
SA AGS P+AA+ + VA P T A+
Sbjct: 121 SATTAGSATTGSPSAATTAATVAAPPTTTAA 151
>U23514-10|AAK95879.1| 301|Caenorhabditis elegans Long protein 1,
isoform b protein.
Length = 301
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 32 SGKCR*SPLVSPAPWPGVCQMP 97
+GKC P +PA + G+C MP
Sbjct: 226 NGKCSNCPANAPACYQGLCYMP 247
>U23514-9|AAC46538.1| 312|Caenorhabditis elegans Long protein 1,
isoform a protein.
Length = 312
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 32 SGKCR*SPLVSPAPWPGVCQMP 97
+GKC P +PA + G+C MP
Sbjct: 237 NGKCSNCPANAPACYQGLCYMP 258
>Z49129-1|CAA88962.1| 262|Caenorhabditis elegans Hypothetical
protein T05B9.1 protein.
Length = 262
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 96 RFTGFDCRGACRYCGLP 146
R+ GF +G CR C LP
Sbjct: 169 RYEGFKDKGLCRSCALP 185
>U23514-11|AAM48531.1| 287|Caenorhabditis elegans Long protein 1,
isoform c protein.
Length = 287
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 35 GKCR*SPLVSPAPWPGVCQMP 97
GKC P +PA + G+C MP
Sbjct: 213 GKCSNCPANAPACYQGLCYMP 233
>AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear receptor
NHR-88 protein.
Length = 598
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Frame = +3
Query: 63 RRLRGQAFAKCRFT-----GFDCRGACRYC 137
R +R Q CRFT D R ACRYC
Sbjct: 67 RTIRSQQTYTCRFTQKCAIDKDQRNACRYC 96
>AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform c protein.
Length = 235
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Frame = +3
Query: 63 RRLRGQAFAKCRFT-----GFDCRGACRYC 137
R +R Q CRFT D R ACRYC
Sbjct: 62 RTIRSQQTYTCRFTQKCAIDKDQRNACRYC 91
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Frame = +3
Query: 63 RRLRGQAFAKCRFT-----GFDCRGACRYC 137
R +R Q CRFT D R ACRYC
Sbjct: 62 RTIRSQQTYTCRFTQKCAIDKDQRNACRYC 91
>AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform a protein.
Length = 593
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Frame = +3
Query: 63 RRLRGQAFAKCRFT-----GFDCRGACRYC 137
R +R Q CRFT D R ACRYC
Sbjct: 62 RTIRSQQTYTCRFTQKCAIDKDQRNACRYC 91
>U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical
protein T08A9.1 protein.
Length = 1330
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 62 SPAPWPGVCQMPLHRFRLSRCLPLLWPP 145
SP P P +C+ P + R S+C + + P
Sbjct: 570 SPVPQPLMCRSPENALRESQCRSIPYVP 597
>Z81115-4|CAB03294.2| 651|Caenorhabditis elegans Hypothetical
protein T05D4.4 protein.
Length = 651
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Frame = -3
Query: 96 GIWQTPGHGAGDTSG-DQRHFP 34
G W P GAG T+G HFP
Sbjct: 617 GHWAVPAAGAGGTAGMSAVHFP 638
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,568,656
Number of Sequences: 27780
Number of extensions: 55655
Number of successful extensions: 161
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 12,740,198
effective HSP length: 29
effective length of database: 11,934,578
effective search space used: 226756982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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