Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O13
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   152   2e-38
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...   147   5e-37
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    29   0.28 
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   4.6  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   6.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   6.1  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    24   8.0  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    24   8.0  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    24   8.0  
SPAC664.08c |||traub transciption factor family protein |Schizos...    24   8.0  
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    24   8.0  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  152 bits (369), Expect = 2e-38
 Identities = 70/116 (60%), Positives = 90/116 (77%)
 Frame = +1

Query: 64  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQETKIASEGLKGRVFEVSLADLQADSDA 243
           +VDPF+RKDWYD+KAP+ F  + VG TLVNRT   K A++ LKGR+ EVSLADLQ   D 
Sbjct: 20  VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77

Query: 244 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGY 411
           E SFRK +L  ED+QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN  +KTTDGY
Sbjct: 78  EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGY 133


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  147 bits (357), Expect = 5e-37
 Identities = 67/116 (57%), Positives = 90/116 (77%)
 Frame = +1

Query: 64  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQETKIASEGLKGRVFEVSLADLQADSDA 243
           +VDPF+RK+WYD+KAP+ F  + VG TLVNRT   K A++ LKGR+ EVSLADLQ   D 
Sbjct: 20  VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77

Query: 244 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGY 411
           E +FRK +L  ED+QG++ L +F+G+ +T+DKLR +V+KWQT IEA+  +KTTDGY
Sbjct: 78  EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGY 133


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 29.1 bits (62), Expect = 0.28
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +1

Query: 199 VFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 372
           VF+V   + + D    R+  +   +A   Q R V C  H MDL  + LR +V  ++   L
Sbjct: 86  VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143

Query: 373 IEANIDVKTT 402
           +E + D++TT
Sbjct: 144 LETSKDLETT 153


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 167 VSWVRLTRVVPTCLLVNMDGALTSYQ 90
           VS +RL R  P   L+N D   TSY+
Sbjct: 222 VSLIRLERTQPILHLMNFDDYSTSYE 247


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 163 ETKIASEGLKGRVFEVSLADLQADSDAERSFRKFR 267
           E  + S    GR  +  +AD   DSD+ERS+R+ R
Sbjct: 348 EEFVGSSSSHGRQQDSYIAD---DSDSERSYRRVR 379


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 144 PCQSHPGNKNCI*GSKGACF 203
           PC  H   K C  G  GACF
Sbjct: 347 PCGEHTCKKRCHSGLCGACF 366


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 185  PSDAIFVSWVRLTRVVPTCLLVNMDGALTSYQ 90
            PSD+ F  W +L R+V +  +  +   LT YQ
Sbjct: 1905 PSDSTFPLWAKLPRLVISEDVQGISQPLTVYQ 1936


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 378 FNQCLPFLYHPSEFISGEV 322
           FNQ + FL HP  F S  V
Sbjct: 410 FNQLIDFLKHPHGFTSSSV 428


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 34  SKGLYFYRPP 5
           S+GLYFY PP
Sbjct: 137 SRGLYFYHPP 146


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 303 ENITSLDILSDKSELAERPFRITISLEISKGDLKNTPL*TLRCNFCFLGAI 151
           E  +   ++     LA+  ++  I L+ S  +L  TP   + CNFC L A+
Sbjct: 187 EEPSKKQVVPSSQRLAD--YKCVICLD-SPENLSCTPCGHIFCNFCILSAL 234


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 322 DLTTD-KLRWMVKKWQTLIEANIDVKTTDG 408
           D T D  +RWM  K Q   + N+D K + G
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKG 380


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 111 RRFNIVPVFTGERINNLLLNTLLASFRKAFIFTD 10
           R  N+V VF G+ + N  LN  +  +    +FT+
Sbjct: 172 RTENVVKVFQGKNVKNDSLNLRVRVWITGIVFTE 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,654,246
Number of Sequences: 5004
Number of extensions: 32347
Number of successful extensions: 90
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)