Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_O13
(412 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 177 2e-45
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 175 9e-45
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 175 9e-45
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 30 0.83
10_06_0125 + 11020726-11020785,11021872-11022198,11022589-11023041 29 1.1
02_05_0952 + 33022742-33023125 29 1.1
11_01_0807 - 7178278-7178548,7178629-7178756,7178847-7179815,718... 29 1.9
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 27 4.4
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 27 4.4
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845... 27 4.4
09_04_0708 + 19648511-19648808,19649189-19649280,19650850-196510... 27 7.7
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267 27 7.7
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 177 bits (432), Expect = 2e-45
Identities = 85/115 (73%), Positives = 97/115 (84%)
Frame = +1
Query: 67 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQETKIASEGLKGRVFEVSLADLQADSDAE 246
VDPF +KDWYD+KAPS+F R +G TLV+RTQ TKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 247 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGY 411
+++RK RL AEDVQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGY 133
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 175 bits (427), Expect = 9e-45
Identities = 85/115 (73%), Positives = 96/115 (83%)
Frame = +1
Query: 67 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQETKIASEGLKGRVFEVSLADLQADSDAE 246
VDPF +KDWYD+KAPS+F R VG TLV+RTQ TKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 247 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGY 411
+++RK RL AEDVQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNY 133
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 175 bits (427), Expect = 9e-45
Identities = 84/115 (73%), Positives = 98/115 (85%)
Frame = +1
Query: 67 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQETKIASEGLKGRVFEVSLADLQADSDAE 246
VDPF++KDWYD+KAP++F+ R +G TLV+RTQ TKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 247 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGY 411
+++RK RL AEDVQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNY 133
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 29.9 bits (64), Expect = 0.83
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 139 TTLVNRTQETKIASEGLKGRVFEV 210
TT+VN +E K+A EG+KG ++V
Sbjct: 17 TTIVNLAEEAKLAREGVKGPGYQV 40
>10_06_0125 + 11020726-11020785,11021872-11022198,11022589-11023041
Length = 279
Score = 29.5 bits (63), Expect = 1.1
Identities = 30/111 (27%), Positives = 43/111 (38%)
Frame = -2
Query: 336 ISGEVHAVEIAENITSLDILSDKSELAERPFRITISLEISKGDLKNTPL*TLRCNFCFLG 157
++ VHAV + + E AE +I ++E +G LK F G
Sbjct: 140 MADNVHAVHFVAPWAPMFKGKTEEEKAEGIKQILAAVETLEGALKGCSK-----EKPFFG 194
Query: 156 AIDKGGAHLSLGEHGRRFNIVPVFTGERINNLLLNTLLASFRKAFIFTDRP 4
G + LG H V TG +I N + LLAS+ + F D P
Sbjct: 195 GGTVGLVDIMLGAHIPGVRATEVLTGAKIFNAAITPLLASWTERFGELDAP 245
>02_05_0952 + 33022742-33023125
Length = 127
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 207 LKNTPL*TLRCNFCFLGAIDKGGAHLSLGEH-GRR 106
++ P T RC F+G + KG HLS+ GRR
Sbjct: 56 IERGPQLTCRCRRRFMGGVGKGAPHLSMARRKGRR 90
>11_01_0807 -
7178278-7178548,7178629-7178756,7178847-7179815,
7180465-7180518,7180622-7180798,7180913-7181926,
7182038-7182101,7182247-7182563,7182797-7182847
Length = 1014
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 92 GTMLKRRPCSPRDKWAPPLSIAP 160
G + R PC PRDK+ P S+ P
Sbjct: 206 GAYIVRLPCGPRDKYLPKESLWP 228
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 272 SLRMSRDVMFSAISTAWTSPLINSDG 349
SL S D+ FS I +AW + SDG
Sbjct: 409 SLESSLDIDFSTIPSAWNDDDVTSDG 434
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 272 SLRMSRDVMFSAISTAWTSPLINSDG 349
SL S D+ FS I +AW + SDG
Sbjct: 466 SLESSLDIDFSTIPSAWNDDDVTSDG 491
>10_06_0143 -
11183574-11183761,11183989-11184344,11184437-11184592,
11184825-11184994,11185906-11186064,11186856-11187164,
11187281-11187576,11187825-11188174,11188279-11188434,
11188634-11188803,11189289-11189447,11190702-11191010,
11191172-11191458,11191911-11192263,11192366-11192521,
11192680-11192849,11195800-11195958,11196937-11197254,
11197658-11197786
Length = 1449
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 277 EDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEAN 384
E +QG LCN +GM T+ LR + W T I N
Sbjct: 180 EKLQGEYQLCNGYGMKKATEVLR---EHWSTYILEN 212
>09_04_0708 +
19648511-19648808,19649189-19649280,19650850-19651000,
19651779-19651906,19652099-19652257,19652325-19652507,
19652978-19653178,19653269-19653289
Length = 410
Score = 26.6 bits (56), Expect = 7.7
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Frame = +1
Query: 145 LVNRTQETKIASEGLK----GRVFEVSLADLQADS----DAERSFRKFRLIAEDVQGRNV 300
L+ R E K E LK + ++++ADL S D +R+ ++ ++ E + N
Sbjct: 122 LLKRRMEIKELMEKLKMPSDADLMKIAIADLNNSSISLEDRQRALQELLILVEPIDNAND 181
Query: 301 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGY 411
L DKL +V Q L AN +++TT +
Sbjct: 182 L----------DKLGGLVAVIQDLNNANEEIRTTSAW 208
>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
Length = 769
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 247 FPHHYQPGDQQGRPQKHAPLDPQMQFLFPG 158
+P+ P D P++H PLD +Q + G
Sbjct: 386 YPYVSNPEDPNHEPRQHEPLDSDVQVIDEG 415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,414,635
Number of Sequences: 37544
Number of extensions: 239855
Number of successful extensions: 628
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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