Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O13
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.44 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   2.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   4.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.2  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              20   9.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.5  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 0.44
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +1

Query: 112 SMFTKRQVGTTLVNRTQETKIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAE 279
           S     + G  L+    +TK++S+G+ G   E + +++      E ++R F  I E
Sbjct: 355 SFVLNNRAGRFLILTESDTKLSSQGILGEDVE-NNSEVSKSRTKESAWRHFAAIIE 409


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +1

Query: 250 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANI----DVKTTDGY 411
           SFR  R+ A +  GRN    + G      K+   +++  +++  ++    DV   D Y
Sbjct: 410 SFRISRVAAYNTYGRNAGLRYRGPKQNKPKVLHAIRRGASILRVSMPKIKDVNIIDKY 467


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 232 DSDAERSFRKFRLIAEDVQGRNVLCN 309
           D  +++  R++RL AED+     + N
Sbjct: 167 DLTSDKLLRQYRLRAEDINMNTFIAN 192


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 114 HVHQETSGHHPCQSHP 161
           H HQ    HHP Q HP
Sbjct: 317 HPHQ----HHPSQYHP 328


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 6/26 (23%), Positives = 16/26 (61%)
 Frame = +1

Query: 313 HGMDLTTDKLRWMVKKWQTLIEANID 390
           +GM +  DK+   + +W+  + +N++
Sbjct: 54  NGMQIWNDKVFITIPRWKNGVPSNLN 79


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 209 SPLLISRLIVMRKGLSASSDLSLRMSRDVMFSAISTA 319
           S  LI+ LIV+      ++D+SL  + D M   I T+
Sbjct: 443 SAALITMLIVLTALGLPTNDISLLFAVDWMLDRIRTS 479


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 137 APPLSIAPRKQKLH 178
           +P ++I PR++K H
Sbjct: 36  SPVITIEPRRRKFH 49


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = -1

Query: 244 PHHYQPGDQQGRPQKHAPLDPQMQ 173
           PH      Q   PQ  A   PQ Q
Sbjct: 810 PHQQLHHHQSTHPQAQAQAQPQQQ 833


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,100
Number of Sequences: 438
Number of extensions: 2336
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)