Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_O12
(345 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 60 7e-11
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 60 7e-11
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 27 0.62
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 2.5
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 25 3.3
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 3.3
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 24 5.8
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 24 5.8
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 24 7.6
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 60.5 bits (140), Expect = 7e-11
Identities = 28/45 (62%), Positives = 34/45 (75%)
Frame = +1
Query: 208 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTE 342
S+K A +R+V S + NMI GVT+GF+YKMR VYAHFPIN TE
Sbjct: 61 SRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTE 105
Score = 48.0 bits (109), Expect = 4e-07
Identities = 22/66 (33%), Positives = 39/66 (59%)
Frame = +3
Query: 30 KQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKLEKWFLF 209
+ I ++ + IP+ +TV +K+R VTV GPRG LK+N +H+ ++++ +K W
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGS 61
Query: 210 *KRTSC 227
K +C
Sbjct: 62 RKHNAC 67
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 60.5 bits (140), Expect = 7e-11
Identities = 28/45 (62%), Positives = 33/45 (73%)
Frame = +1
Query: 208 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTE 342
S+K A +RT S + NMI GVT+GF+YKMR VYAHFPIN TE
Sbjct: 61 SRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTE 105
Score = 52.0 bits (119), Expect = 3e-08
Identities = 24/66 (36%), Positives = 41/66 (62%)
Frame = +3
Query: 30 KQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKLEKWFLF 209
+ I ++ + IPE ++V +K+RLVTVKGPRGVLK+N + + ++++ +K W
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGS 61
Query: 210 *KRTSC 227
K +C
Sbjct: 62 RKHNAC 67
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 0.62
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 55 TFWFATICFILGLCLT 8
TFWF +IC IL +C +
Sbjct: 281 TFWFQSICLILYICFS 296
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 2.5
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 244 SILS*QQLVLF*NKNHFSSFNWRGLTMRMSTAKCLKFRF 128
S LS L L +KN F ++ RGL + +ST L+F F
Sbjct: 648 SPLSNNALFLAYDKNPFLTYFKRGLNVSLSTDDPLQFAF 686
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 3.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 64 GIFTFWFATICFILGLCLTL 5
G+ WFA +CF G LT+
Sbjct: 276 GVVLIWFAWLCFNSGTLLTV 295
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 3.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 125 NSARTFHCHQTRFHMDGETLRNLH 54
+S R FH Q+ FH++G N++
Sbjct: 573 HSVRFFHAIQSHFHLEGPIRYNMN 596
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 24.2 bits (50), Expect = 5.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 237 SMLSCRKHDQRCDQGIPIQDACSVRS 314
S L+CR+ +CD G P + C RS
Sbjct: 22 SCLACRRKKLKCDHGRPCSN-CLKRS 46
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 24.2 bits (50), Expect = 5.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 146 VFEVSF*NSARTFHCHQTRFHMDGETLRNLH 54
V E S N A+ FH R + G L NLH
Sbjct: 144 VIEFSSPNIAKPFHAGHLRSTIIGSFLANLH 174
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 23.8 bits (49), Expect = 7.6
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -1
Query: 342 LSGDTVDREMSV-HCTHLVLESLGHTFDHVFDMRAY 238
L G +D S+ + L++L H D F+ +AY
Sbjct: 242 LQGQKIDNSESLPDILSITLDNLSHPTDEYFEAKAY 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,423,475
Number of Sequences: 5004
Number of extensions: 25944
Number of successful extensions: 70
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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