Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O12
         (345 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...    79   8e-16
AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical ...    27   2.7  
AF067937-2|AAF99916.1|  381|Caenorhabditis elegans Choline kinas...    27   2.7  
AF016676-3|AAG24101.2|  494|Caenorhabditis elegans Cytochrome p4...    27   2.7  
AF016449-15|AAG24002.1|  496|Caenorhabditis elegans Cytochrome p...    27   3.6  
U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase ...    26   6.3  
U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase ...    26   6.3  
U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase ...    26   6.3  
U29376-4|AAM51504.1|  682|Caenorhabditis elegans Protein kinase ...    26   6.3  
U29376-3|AAM51503.1|  680|Caenorhabditis elegans Protein kinase ...    26   6.3  
Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical pr...    26   8.3  
AF025463-4|AAB71010.2|  344|Caenorhabditis elegans Serpentine re...    26   8.3  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score = 79.0 bits (186), Expect = 8e-16
 Identities = 33/45 (73%), Positives = 40/45 (88%)
 Frame = +1

Query: 211 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEG 345
           +KELAA+RTVCSH++NMIKGVT GF+YKMR+VYAHFPIN    +G
Sbjct: 62  RKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDG 106



 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 24/59 (40%), Positives = 39/59 (66%)
 Frame = +3

Query: 27  MKQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKLEKWF 203
           MK I +N  V  PE +T  VK+R+V V GPRG ++++F+HL +++  +    L++ KWF
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWF 59


>AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical
           protein F49F1.6 protein.
          Length = 259

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 228 C*DSMLSCRKHDQRCDQGIPIQDACSVRSFPYQLCH 335
           C DSM++C     +CDQG  +Q  C    +   +CH
Sbjct: 21  CEDSMITCPDLKDQCDQGF-VQSQC---PYTCGICH 52


>AF067937-2|AAF99916.1|  381|Caenorhabditis elegans Choline kinase b
           protein 4 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 196 FSSFNWRGLTMRMSTAKCLKFRFRTPRGPFTVTKRDF 86
           +SS+NWRG  + M   +   F +R P  P  V  +D+
Sbjct: 243 YSSYNWRGFDLCMFLCE-NAFDYRDPTPPGLVIDQDY 278


>AF016676-3|AAG24101.2|  494|Caenorhabditis elegans Cytochrome p450
           family protein 33C5 protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 82  WTVRLSGIFTFWFATICFIL 23
           WT +  G++TFW   I +++
Sbjct: 54  WTKQFGGVYTFWMGNIPYVI 73


>AF016449-15|AAG24002.1|  496|Caenorhabditis elegans Cytochrome p450
           family protein 33C9 protein.
          Length = 496

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -3

Query: 118 RGPFTVTKRDFTWTVRLSGIFTFWFATICFIL 23
           R P    K    WT +   I+TFW  T  +IL
Sbjct: 42  RNPAPGYKAFARWTAKYGDIYTFWLGTRPYIL 73


>U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase C2
           B isoform protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 235 TVCSHVENMIKGVTK-GFQYKMRAVYAH 315
           T CSH ++ + G+TK GFQ ++  +  H
Sbjct: 50  TFCSHCKDFLWGITKQGFQCQVCTLVVH 77


>U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase C2
           A isoform protein.
          Length = 680

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 235 TVCSHVENMIKGVTK-GFQYKMRAVYAH 315
           T CSH ++ + G+TK GFQ ++  +  H
Sbjct: 50  TFCSHCKDFLWGITKQGFQCQVCTLVVH 77


>U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase c
           protein 2, isoformc protein.
          Length = 936

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 235 TVCSHVENMIKGVTK-GFQYKMRAVYAH 315
           T CSH ++ + G+TK GFQ ++  +  H
Sbjct: 190 TFCSHCKDFLWGITKQGFQCQVCTLVVH 217


>U29376-4|AAM51504.1|  682|Caenorhabditis elegans Protein kinase c
           protein 2, isoformb protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 235 TVCSHVENMIKGVTK-GFQYKMRAVYAH 315
           T CSH ++ + G+TK GFQ ++  +  H
Sbjct: 50  TFCSHCKDFLWGITKQGFQCQVCTLVVH 77


>U29376-3|AAM51503.1|  680|Caenorhabditis elegans Protein kinase c
           protein 2, isoforma protein.
          Length = 680

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 235 TVCSHVENMIKGVTK-GFQYKMRAVYAH 315
           T CSH ++ + G+TK GFQ ++  +  H
Sbjct: 50  TFCSHCKDFLWGITKQGFQCQVCTLVVH 77


>Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical
           protein C47A10.6 protein.
          Length = 346

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 315 MSVHCTHLVLESLGHTFDHVFDMRAY 238
           M +HC  L++  +   F H+FD+  Y
Sbjct: 63  MKIHCAALLIHCVPRFFLHLFDLYYY 88


>AF025463-4|AAB71010.2|  344|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 3 protein.
          Length = 344

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 309 VHCTHLVLESLGHTFDHVFDMRAYCPNSS*FFFRTRTISPVST 181
           ++ T+L L S     DHVF +  Y  N     F T  I  +ST
Sbjct: 1   MNATNLQLISHAQKIDHVFKIIGYIVNPLGILFNTLLIILIST 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,969,151
Number of Sequences: 27780
Number of extensions: 150134
Number of successful extensions: 380
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)