Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_O10
(403 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 171 5e-44
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 171 5e-44
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 171 5e-44
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 84 9e-18
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 81 5e-17
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 45 5e-06
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 41 8e-05
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 36 0.002
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 34 0.007
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 34 0.007
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 30 0.12
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 27 1.1
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 2.5
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 25 3.3
SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15 |Schi... 25 3.3
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 25 3.3
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 4.4
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 4.4
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 25 5.8
SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex s... 24 7.7
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 24 7.7
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 171 bits (415), Expect = 5e-44
Identities = 80/90 (88%), Positives = 84/90 (93%)
Frame = +1
Query: 133 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERAIEKFEKEAHEMGKGSFKYAGVL 312
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGID+R IEKFEKEA E+GKGSFKYA VL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 313 DKLKAERERGITIDIALWKFETGKYYVTII 402
DKLKAERERGITIDIALWKFET KY VT+I
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVI 90
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 171 bits (415), Expect = 5e-44
Identities = 80/90 (88%), Positives = 84/90 (93%)
Frame = +1
Query: 133 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERAIEKFEKEAHEMGKGSFKYAGVL 312
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGID+R IEKFEKEA E+GKGSFKYA VL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 313 DKLKAERERGITIDIALWKFETGKYYVTII 402
DKLKAERERGITIDIALWKFET KY VT+I
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVI 90
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 171 bits (415), Expect = 5e-44
Identities = 80/90 (88%), Positives = 84/90 (93%)
Frame = +1
Query: 133 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERAIEKFEKEAHEMGKGSFKYAGVL 312
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGID+R IEKFEKEA E+GKGSFKYA VL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 313 DKLKAERERGITIDIALWKFETGKYYVTII 402
DKLKAERERGITIDIALWKFET KY VT+I
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVI 90
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 83.8 bits (198), Expect = 9e-18
Identities = 37/77 (48%), Positives = 54/77 (70%)
Frame = +1
Query: 154 INIVVIGHVDSGKSTTTGHLIYKCGGIDERAIEKFEKEAHEMGKGSFKYAGVLDKLKAER 333
+++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YA +LD + ER
Sbjct: 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEER 237
Query: 334 ERGITIDIALWKFETGK 384
RG+T+D+A FE+ K
Sbjct: 238 ARGVTMDVASTTFESDK 254
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 81.4 bits (192), Expect = 5e-17
Identities = 37/78 (47%), Positives = 53/78 (67%)
Frame = +1
Query: 145 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERAIEKFEKEAHEMGKGSFKYAGVLDKLK 324
K H+NIV IGHVD+GKST G++++ G +D+R +EK E+EA E GK S+ + LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 325 AERERGITIDIALWKFET 378
ERE+G T+++ FET
Sbjct: 296 EEREKGKTVEVGRAYFET 313
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 44.8 bits (101), Expect = 5e-06
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +1
Query: 139 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERAIEKFEKEAHEMGKGSFKYAGVLDK 318
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 319 LKAERERGITIDIALWKFET-GKYYVTI 399
E+ RGITI A ++ET ++Y +
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHV 121
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 40.7 bits (91), Expect = 8e-05
Identities = 25/68 (36%), Positives = 37/68 (54%)
Frame = +1
Query: 157 NIVVIGHVDSGKSTTTGHLIYKCGGIDERAIEKFEKEAHEMGKGSFKYAGVLDKLKAERE 336
NI + H+DSGK+T T ++Y G I K+ HE+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 337 RGITIDIA 360
+GITI A
Sbjct: 111 KGITIQSA 118
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 36.3 bits (80), Expect = 0.002
Identities = 26/82 (31%), Positives = 39/82 (47%)
Frame = +1
Query: 157 NIVVIGHVDSGKSTTTGHLIYKCGGIDERAIEKFEKEAHEMGKGSFKYAGVLDKLKAERE 336
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGD----TVMDYLPAERQ 76
Query: 337 RGITIDIALWKFETGKYYVTII 402
RGITI+ A F + +I
Sbjct: 77 RGITINSAAISFTWRNQRINLI 98
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 34.3 bits (75), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 133 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 228
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 34.3 bits (75), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 133 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 228
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.3 bits (65), Expect = 0.12
Identities = 23/65 (35%), Positives = 31/65 (47%)
Frame = +1
Query: 157 NIVVIGHVDSGKSTTTGHLIYKCGGIDERAIEKFEKEAHEMGKGSFKYAGVLDKLKAERE 336
N VI H+D GKST + ++ G I+E F + LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINE---HNFRNQ-------------FLDKLEVERR 103
Query: 337 RGITI 351
RGIT+
Sbjct: 104 RGITV 108
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 27.1 bits (57), Expect = 1.1
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +1
Query: 145 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERAIEKFEKEAHEMGKGSFKY 300
KV+ +++I ++D G L G ID+ + +K+A G+ +F+Y
Sbjct: 591 KVNAQVMLIKNIDD--QLVNGSLGKVIGFIDDETYQMEKKDAEMQGRNAFEY 640
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 2.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 181 DSGKSTTTGHLIYKCGGIDE 240
+S K TT GH++ +C IDE
Sbjct: 1881 NSVKFTTEGHILLRCMAIDE 1900
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 3.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 224 AVVSTNVPSKSSRRKPMKWVRVPS 295
A++S + K + +P KWV VPS
Sbjct: 224 ALISNGLKVKETSEEPEKWVVVPS 247
>SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 25.4 bits (53), Expect = 3.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 238 ERAIEKFEKEAHEMGKGSFKYAGVLDKLKAERE 336
E A + E + E+G GSF G +D + + E
Sbjct: 69 EEANQDTELDEEELGSGSFPEEGEMDDMDGDNE 101
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 25.4 bits (53), Expect = 3.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +1
Query: 163 VVIGHVDSGKSTTTGHLIYKCGGIDERAI 249
+V+GH GK+T +Y+ G + I
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAGWASQNGI 73
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 4.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 127 PKMGKEKVHINIVVIGHVDSGKST 198
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 4.4
Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +3
Query: 345 HHRY-CSLEVRNRQILCHHH 401
HH++ C L V+N+++ H H
Sbjct: 196 HHKFFCDLCVKNKKVFTHEH 215
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 24.6 bits (51), Expect = 5.8
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 130 KMGKEKVHINIVVIGHVDSGKSTT-----TGHLIYKCGGIDERAIEKFEKEAH 273
K+ + N++V+G SGKST + HL+ G +D +A + E H
Sbjct: 25 KLIRRGFQFNVMVVGPSGSGKSTLINTLFSAHLMDSKGRLDYQAPYRQTTEIH 77
>SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex
subunit Arc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 24.2 bits (50), Expect = 7.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 365 QRAISMVIPRSRSAFSLSNTPAYLKEPLPISWASFSN 255
Q A+S +IP++RSA N LK L S+ + N
Sbjct: 33 QAAVSQLIPQARSAIQTGNALQGLKTLL--SYVPYGN 67
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 7.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 160 IVVIGHVDSGKSTTTGHLIYKC 225
IVV+G SGKST + +C
Sbjct: 115 IVVVGETGSGKSTQIPQFLNEC 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,648,847
Number of Sequences: 5004
Number of extensions: 30868
Number of successful extensions: 119
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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