Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O08
         (141 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    23   4.2  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    23   5.5  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    22   9.6  

>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 26  QYIPALIPTSNSLRRHIYIAFALLLHSVSFGF 121
           Q   ALI     +  +IY+   L+++S  FG+
Sbjct: 326 QLYAALISLGRKIVSYIYVKLDLIINSKHFGY 357


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 110 IHYVIVTRRLYKYGVLNYWK 51
           I+ ++VT   +K GVL  WK
Sbjct: 776 IYLILVTLSTHKNGVLAMWK 795


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 44  IPTSNSLRRHIYIAFALLL 100
           +PT+NSL +   I FAL++
Sbjct: 214 VPTTNSLLKKSKIPFALVI 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 544,038
Number of Sequences: 5004
Number of extensions: 6650
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 27
effective length of database: 2,227,370
effective search space used: 42320030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)