Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O08
         (141 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040646-2|AAK31538.1|  275|Caenorhabditis elegans Hypothetical ...    27   2.4  
Z70781-1|CAA94835.1|  358|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AC006730-1|AAK72090.1|  324|Caenorhabditis elegans Serpentine re...    25   7.3  

>AF040646-2|AAK31538.1|  275|Caenorhabditis elegans Hypothetical
           protein H17B01.3 protein.
          Length = 275

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 54  EVGISAGIYCSYRXKPSC 1
           E GI+ GIYCSY    +C
Sbjct: 173 EEGINQGIYCSYSTTHTC 190


>Z70781-1|CAA94835.1|  358|Caenorhabditis elegans Hypothetical
           protein F57A8.3 protein.
          Length = 358

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 113 MIHYVIVTRRLYKYGVLNYWKSESVRGYIV 24
           +I Y I+T  L+ YG +++W   ++ G I+
Sbjct: 188 VICYYILTTPLHNYGDVDWWTMGALLGLII 217


>AC006730-1|AAK72090.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein33 protein.
          Length = 324

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 141 SIY*KSLNPNDTLCNSNAKAI*IWRLKLLEVGISAGIYCS 22
           S Y K L+    L N       IW + L  +GI  GI+C+
Sbjct: 164 SRYPKYLSEFKNLSNFAIYQFNIWHVFLAGIGIVGGIFCA 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,486
Number of Sequences: 27780
Number of extensions: 33236
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 12,740,198
effective HSP length: 27
effective length of database: 11,990,138
effective search space used: 227812622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)