Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O08
         (141 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   2.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    20   2.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    19   7.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    19   7.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    19   7.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    19   7.2  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
 Frame = -2

Query: 80  YKYGVLN---YWKSESVRG 33
           Y Y VL+   YWK   VRG
Sbjct: 182 YGYTVLDVVMYWKETPVRG 200


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 80  YKYGVLNYWKSESVRGYIVLI 18
           YKY   NY K    + YI+ I
Sbjct: 329 YKYNYNNYNKKLYYKNYIINI 349


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 83  LYKYGVLNYWKSE 45
           L +Y +LN+ KSE
Sbjct: 397 LARYEILNFRKSE 409


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 21  KNNISPH*FRLPIV*DAIFI*PSRYYYIVYHS 116
           KNN+     R  +V D IF+  S   Y +Y S
Sbjct: 54  KNNLLNAYVRFKLVTDCIFV-TSEPGYFLYTS 84


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 120 NPNDTLCNSNAKAI*IWR 67
           NP + L + +  AI IW+
Sbjct: 184 NPGNPLAHYDQTAIEIWK 201


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 83  LYKYGVLNYWKSE 45
           L +Y +LN+ KSE
Sbjct: 487 LARYEILNFRKSE 499


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,198
Number of Sequences: 438
Number of extensions: 473
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 27
effective length of database: 134,517
effective search space used:  2555823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)