Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O07
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    92   3e-20
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    87   7e-19
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    83   1e-17
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    29   0.27 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    29   0.27 
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    26   2.6  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    25   5.9  

>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 92.3 bits (219), Expect = 3e-20
 Identities = 40/66 (60%), Positives = 57/66 (86%)
 Frame = +3

Query: 39  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEVGRG 218
           M+Y+AAYLL  +GGK SP+A+D+E +LS+VGIEA++E+++ +ISELNGKN+EELI  G  
Sbjct: 1   MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60

Query: 219 KLSSMP 236
           KLS++P
Sbjct: 61  KLSTVP 66


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 87.4 bits (207), Expect = 7e-19
 Identities = 37/66 (56%), Positives = 57/66 (86%)
 Frame = +3

Query: 39  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEVGRG 218
           M+Y+AAYLL  +GGK SP+A+D+E +LS+VGIEA+SE+++ +I+ELNGK+++ELI  G  
Sbjct: 1   MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60

Query: 219 KLSSMP 236
           KL+++P
Sbjct: 61  KLATVP 66


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 83.4 bits (197), Expect = 1e-17
 Identities = 35/66 (53%), Positives = 56/66 (84%)
 Frame = +3

Query: 39  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEVGRG 218
           M+Y+AAYLL  +GGK SP+A+D+E +LS+VGIE++SE+++ +I EL+GK+++ELI  G  
Sbjct: 1   MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60

Query: 219 KLSSMP 236
           KL+++P
Sbjct: 61  KLATVP 66


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 29.1 bits (62), Expect = 0.27
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 108 EKILSSVGIEADSEKLKKVISELNGKNVEELI 203
           E +L S G+E  S+   KV S +N K+VEE I
Sbjct: 297 ELVLLSEGVEMYSDDWAKVASHVNTKSVEECI 328


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 29.1 bits (62), Expect = 0.27
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 105  VEKILSSVGIEADSEKLKKVISELNGKNVEELIEV 209
            V++I   VG+E DSE  K  + E+ G    +  E+
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKGNKSYDSYEI 1776


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 87  SPAAADVEKILS--SVGIEADSEKLKKVISELNGKNVEELIEVGRGKLS 227
           SP++  +  ++   + G   DSEK+K  +  +  K+ ++  E+  GK S
Sbjct: 444 SPSSKPISTLIQEKNFGTIGDSEKIKACVESVLSKHSKQFEELKNGKTS 492


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 81  KASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEVGR 215
           KAS A A     +  VGI+ DS    K     + +  EE +E+ R
Sbjct: 274 KASGAVAIRNPYIRVVGIQMDSNDGSKSTPLFSEEEEEEFLEISR 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,109,971
Number of Sequences: 5004
Number of extensions: 13868
Number of successful extensions: 42
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)