Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O07
         (406 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161     81   4e-16
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129           70   6e-13
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    69   2e-12
07_01_1001 - 8460467-8460799                                           60   5e-10
07_03_0321 + 16757414-16757743                                         60   9e-10
01_06_0098 - 26416768-26416998                                         31   0.26 
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    28   2.4  
12_01_0731 - 6516894-6517473,6517485-6519574                           27   4.3  
01_06_0476 + 29614228-29614300,29614482-29615425                       27   7.5  
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760...    26   9.9  
01_07_0135 + 41342118-41342181,41342326-41343260                       26   9.9  

>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
          Length = 113

 Score = 80.6 bits (190), Expect = 4e-16
 Identities = 36/66 (54%), Positives = 52/66 (78%)
 Frame = +3

Query: 39  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEVGRG 218
           M+ +AAYLLAVLGG  SP+A D++ IL SVG+EA+ E+L+ ++SEL GK++ E+I  GR 
Sbjct: 1   MKLIAAYLLAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGRE 60

Query: 219 KLSSMP 236
           K +S+P
Sbjct: 61  KFASVP 66


>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
          Length = 114

 Score = 70.1 bits (164), Expect = 6e-13
 Identities = 30/66 (45%), Positives = 49/66 (74%)
 Frame = +3

Query: 39  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEVGRG 218
           M++++AYL+A L G +SP A D+  IL SVG E D+ K++ ++S+++GK++ ELI  GR 
Sbjct: 1   MKFISAYLMAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGRE 60

Query: 219 KLSSMP 236
           K +S+P
Sbjct: 61  KFASVP 66


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 30/67 (44%), Positives = 48/67 (71%)
 Frame = +3

Query: 36  KMRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEVGR 215
           +M++++AYLLA L G  +P+A D+  IL SVG E D  K++ ++S+L GK++ E+I  GR
Sbjct: 193 RMKFISAYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGR 252

Query: 216 GKLSSMP 236
            K +S+P
Sbjct: 253 EKFASVP 259


>07_01_1001 - 8460467-8460799
          Length = 110

 Score = 60.5 bits (140), Expect = 5e-10
 Identities = 27/63 (42%), Positives = 41/63 (65%)
 Frame = +3

Query: 39  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEVGRG 218
           MR+VAAYL+A +GG ASP   DV  IL +VG + D +KL  +  ++ GK++ E++  G  
Sbjct: 1   MRFVAAYLMATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSE 60

Query: 219 KLS 227
            L+
Sbjct: 61  MLA 63


>07_03_0321 + 16757414-16757743
          Length = 109

 Score = 59.7 bits (138), Expect = 9e-10
 Identities = 27/63 (42%), Positives = 41/63 (65%)
 Frame = +3

Query: 39  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEVGRG 218
           MR+VAAYL+A +GG ASP   DV  IL +VG + D +KL  +  ++ GK++ E++  G  
Sbjct: 1   MRFVAAYLMATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSE 60

Query: 219 KLS 227
            L+
Sbjct: 61  MLA 63


>01_06_0098 - 26416768-26416998
          Length = 76

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 90  PAAADVEKILSSVGIEADSEKLKKVISELNGKN 188
           P    V KI+ +V IEADS + K ++  L GK+
Sbjct: 16  PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 75  GGKA-SPAAADVEKILSSVGIEADSEKLKKVISELNGKNVE 194
           GG+  SPA  D+   L+  G E DS   + ++S+LNG   E
Sbjct: 45  GGQGDSPATQDLLSKLNGSGGEGDSPATQDLLSKLNGSGGE 85


>12_01_0731 - 6516894-6517473,6517485-6519574
          Length = 889

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 67  PCWAAKRPQLLLMSKRSSALWG 132
           PCW +K PQLL++  +S+   G
Sbjct: 714 PCWMSKLPQLLVLVLKSNRFSG 735


>01_06_0476 + 29614228-29614300,29614482-29615425
          Length = 338

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
 Frame = +3

Query: 90  PAAADVEKILSSVGIEADSEKL----KKVISELNGKNVEELIEVGRGKLSSM 233
           P  ++V ++  S GI  DS ++       ++ L+G N+  +++VG G LSS+
Sbjct: 41  PGPSEVVQLYRSKGI--DSMRIYFADAAALNALSGSNIGLIMDVGNGNLSSL 90


>06_03_1190 -
           28274801-28275163,28275662-28275853,28275965-28276088,
           28276177-28276320,28276524-28276640,28277189-28277308,
           28277433-28277521,28277609-28277685,28278250-28278322,
           28278578-28279012,28280247-28280442,28281270-28281490,
           28281591-28281703,28282552-28283146,28283236-28283418,
           28283548-28283712,28283808-28284029
          Length = 1142

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 43  VTWPRIYSPCWAAKRPQLLLMSKRSSALW 129
           + WPR     W A  P   L S++S   W
Sbjct: 132 IRWPRSRDEVWKANIPHTHLASEKSDQRW 160


>01_07_0135 + 41342118-41342181,41342326-41343260
          Length = 332

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 78  GKASPAAADVEKILSSVGIEADSEKLKK--VISELNGKNVEELIEVGRGKLSS 230
           G   PAA+DV K+  S GI++      +  ++  L G N+   ++V    L++
Sbjct: 34  GNNLPAASDVVKLYKSKGIDSMRIYFPRSDILQALTGSNIALTMDVANENLAA 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,726,401
Number of Sequences: 37544
Number of extensions: 106285
Number of successful extensions: 372
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)