Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O05
         (132 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    23   5.5  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    23   7.3  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    23   7.3  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    22   9.7  

>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 119 YSNFNNNSNKSER*SILMNITEQPQYNHSEYTNLEF 12
           ++ FN  +NKS   S++ ++  +  Y   E    EF
Sbjct: 42  HNTFNITNNKSRPGSLMKSMKRKDVYEFDEDNEFEF 77


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 29  ILSDYIVAAQLYSLESI 79
           ++ +Y VAAQ+Y L ++
Sbjct: 691 LIEEYAVAAQIYKLSAV 707


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
          Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 65 NITEQPQYNHSE 30
          +ITEQP+Y H E
Sbjct: 43 HITEQPKYEHLE 54


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 56  EQPQYNHSEYTNLEFT 9
           E PQ+NH +++   FT
Sbjct: 73  ELPQFNHRDFSRRAFT 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 500,469
Number of Sequences: 5004
Number of extensions: 5856
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 24
effective length of database: 2,242,382
effective search space used: 42605258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)