Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O05
         (132 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92780-7|CAI46552.1|  624|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z92780-6|CAI46551.1|  691|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z81068-15|CAB02980.2|  624|Caenorhabditis elegans Hypothetical p...    26   4.2  
Z81068-14|CAJ30229.1|  691|Caenorhabditis elegans Hypothetical p...    26   4.2  
EF443133-1|ABO31113.1|  656|Caenorhabditis elegans LIM-9 isoform...    26   4.2  

>Z92780-7|CAI46552.1|  624|Caenorhabditis elegans Hypothetical
           protein F25H5.1a protein.
          Length = 624

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 113 NFNNNSNKSER*SILMNITEQPQYNHSEYTN 21
           N N+N+N S    ++ ++T+ P+Y  S Y N
Sbjct: 15  NNNSNNNNSNHGMVIEDVTDDPEY--SSYGN 43


>Z92780-6|CAI46551.1|  691|Caenorhabditis elegans Hypothetical
           protein F25H5.1f protein.
          Length = 691

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 113 NFNNNSNKSER*SILMNITEQPQYNHSEYTN 21
           N N+N+N S    ++ ++T+ P+Y  S Y N
Sbjct: 15  NNNSNNNNSNHGMVIEDVTDDPEY--SSYGN 43


>Z81068-15|CAB02980.2|  624|Caenorhabditis elegans Hypothetical
           protein F25H5.1a protein.
          Length = 624

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 113 NFNNNSNKSER*SILMNITEQPQYNHSEYTN 21
           N N+N+N S    ++ ++T+ P+Y  S Y N
Sbjct: 15  NNNSNNNNSNHGMVIEDVTDDPEY--SSYGN 43


>Z81068-14|CAJ30229.1|  691|Caenorhabditis elegans Hypothetical
           protein F25H5.1f protein.
          Length = 691

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 113 NFNNNSNKSER*SILMNITEQPQYNHSEYTN 21
           N N+N+N S    ++ ++T+ P+Y  S Y N
Sbjct: 15  NNNSNNNNSNHGMVIEDVTDDPEY--SSYGN 43


>EF443133-1|ABO31113.1|  656|Caenorhabditis elegans LIM-9 isoform
           protein.
          Length = 656

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 113 NFNNNSNKSER*SILMNITEQPQYNHSEYTN 21
           N N+N+N S    ++ ++T+ P+Y  S Y N
Sbjct: 15  NNNSNNNNSNHGMVIEDVTDDPEY--SSYGN 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,757
Number of Sequences: 27780
Number of extensions: 30191
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 12,740,198
effective HSP length: 24
effective length of database: 12,073,478
effective search space used: 229396082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)