Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O04
         (180 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    25   1.0  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    23   4.0  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    23   5.3  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    22   9.3  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    22   9.3  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    22   9.3  

>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 143 PFLYHAIDANEPFLLKFCMVY 81
           P LY AIDAN P +L+  + Y
Sbjct: 411 PELYMAIDANAPLILRPLIFY 431


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 149 SFPFLYHAIDANEPFLLKF 93
           +FP L H I  N+P L +F
Sbjct: 213 TFPNLQHCIKKNQPILKQF 231


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 151 IVFHFYITLLMPTNRFY*NFVWFTDGAFL 65
           +V H  ITLL+    +Y +F W     F+
Sbjct: 225 LVVHHIITLLLIGLSYYFHFTWIGLAVFI 253


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 166 YKRTIIVFHFYITLLMPTNRFY*NFVWF 83
           +++  +VF FY+  L+ T+ F+ N + F
Sbjct: 204 FRQIFVVFLFYLAGLIITSGFFLNSLSF 231


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 97  NFVWFTDGAF 68
           NFV+ TDGAF
Sbjct: 235 NFVYMTDGAF 244


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 163 KRTIIVFHFYITLLMPTNRFY*N 95
           K  +++FH+Y+ ++   N+ Y N
Sbjct: 228 KSHVVIFHYYLGIVAFLNQNYKN 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 596,013
Number of Sequences: 5004
Number of extensions: 7498
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)