Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O03
         (250 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    63   6e-12
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    46   7e-07
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   0.27 
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   0.48 
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    25   1.1  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   1.5  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    23   4.5  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    23   4.5  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    23   5.9  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    23   5.9  
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    23   5.9  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    23   5.9  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    23   7.8  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    23   7.8  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    23   7.8  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 62.9 bits (146), Expect = 6e-12
 Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
 Frame = +2

Query: 14  LSVKVHPVVLFQIVDAYERRNADSHRVIGTLLGT--SDKGVVEVTNCFCVPHKEHADQVE 187
           L++ + P VLF I+D   R++ ++ RVIGTLLGT   D   +E+ +CF VPH E ++QVE
Sbjct: 21  LNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVE 80

Query: 188 AE 193
            E
Sbjct: 81  VE 82


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 46.0 bits (104), Expect = 7e-07
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +2

Query: 20  VKVHPVVLFQIVDAYERR-NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAET 196
           V VHP+VL   VD+Y R       RV+G LLG ++  VV V N + +P +E  D+  A  
Sbjct: 17  VIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEE--DEKNASV 74

Query: 197 *LCHGVFME 223
                 FME
Sbjct: 75  WFLDHNFME 83


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 0.27
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = -2

Query: 240 STRLSSSINTPWHN*VSASTWSACSLCGTQKQFVTSTTPLSLVPNNVPMTL*ESAFRRSY 61
           ST  +S+ +TP  +  SA++ +A S   T    V STT  S   ++ P+T   S    S 
Sbjct: 313 STTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATS--ASSTPLTSVNSTTATSA 370

Query: 60  AST 52
           +ST
Sbjct: 371 SST 373



 Score = 23.0 bits (47), Expect = 5.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 240 STRLSSSINTPWHN*VSASTWSACSLCGTQKQFVTSTTPLSLVPN 106
           ST  +S+ +TP  +  S S  SA S   T     TST+  S  P+
Sbjct: 364 STTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPS 408



 Score = 23.0 bits (47), Expect = 5.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 240 STRLSSSINTPWHN*VSASTWSACSLCGTQKQFVTSTTPLSLVPN 106
           ST  +S+ +TP  +  S S  SA S   T     TST+  S  P+
Sbjct: 478 STTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPS 522


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 0.48
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 62  YERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE 187
           Y+ R  DSHR I  L GT  +  +   +   + +K H  ++E
Sbjct: 483 YDHRLRDSHREIYQLQGTGYRPFLRANDNASINNKNHHKELE 524


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +2

Query: 8   LNLSVKVHPVVLFQIVDAYERRNADSHRVI-----GTLLGTSDKGVVEVTNCFCVPHKEH 172
           LN+ ++   +V+ ++++  ++RN D H  I       +  TSD  ++ + N F +    H
Sbjct: 253 LNIIIQEVDIVIGELIEGLKKRNIDKHVNIIFLSDHGMAPTSDNRLIWLDNMFNLSAVAH 312

Query: 173 AD 178
            D
Sbjct: 313 RD 314


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 159 GTQKQFVTSTTPLSLVPNNV 100
           GTQ+ FV  TT   + PNNV
Sbjct: 187 GTQQNFVRQTTKYWVHPNNV 206


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 113 FPIMFR*LYESPHFDVHMHLLFEIKQQGEP 24
           F I F  LY S   D  M  LF+ + +G P
Sbjct: 298 FWIQFAVLYRSGPGDAQMPSLFQARLEGSP 327


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 249 SDASTRLSSSINTPWHN*VSASTWSACSLCGTQKQFVTSTTPLS 118
           S +S++ SSS ++   +  S S+ S  S   +   F+TSTTP S
Sbjct: 192 SSSSSKSSSSSSSSSKSSASPSS-SKSSSKFSSSSFITSTTPAS 234


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 144 FVTSTTPLSLVPNNVP 97
           F T    +SLVPNN+P
Sbjct: 190 FYTKLPDVSLVPNNMP 205


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 249 SDASTRLSSSINTPWHN*VSASTWSACSLCGTQKQFVTSTTPLSLVPN 106
           S + T  ++SIN P++   S          GT  QF+ +  P   V N
Sbjct: 83  SPSFTSSANSINQPYNYSGSLENLVPTPSAGTPSQFMDAQNPYGAVYN 130


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 131 VEVTNCFCVPHKE 169
           V V NC  +PHKE
Sbjct: 391 VRVQNCLVLPHKE 403


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 180 WSACSLCGTQKQFVTSTTPLSLVPNNVPMTL*ESAFRR 67
           WS+ +     KQ   S   L L   N+P  + E+A RR
Sbjct: 508 WSSLTNAAPDKQTGHSPRVLVLAATNLPWCIDEAARRR 545


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 44  FQIVDAYERRNADSHRVIG 100
           + IV  Y   ++D HRV+G
Sbjct: 180 YDIVIEYHTTSSDQHRVVG 198


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 32  PVVLFQIVDAYERRNADSHRVIGT 103
           P+V+FQ ++ Y   N  +H  + T
Sbjct: 202 PLVMFQAINPYLNNNYYTHDTVDT 225


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 35  VVLFQIVDAYERRNADSHRVIGTLLGTS 118
           VV   ++   E +  +SH   GTL GTS
Sbjct: 97  VVSHPVMSGSELKGEESHNSPGTLNGTS 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 923,644
Number of Sequences: 5004
Number of extensions: 14683
Number of successful extensions: 55
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)