Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O03
         (250 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    57   1e-09
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    40   3e-04
AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical ...    28   1.0  
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ...    28   1.0  
AF016445-7|AAC69060.1|  249|Caenorhabditis elegans Pharyngeal gl...    27   1.3  
Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z27079-12|CAD44154.1|   92|Caenorhabditis elegans Hypothetical p...    25   7.1  
Z69663-4|CAA93508.1|  287|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
 Frame = +2

Query: 11  NLSVKVHPVVLFQIVDAYERR------NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEH 172
           NL+V VHP V   +VD + RR      N    + +GTL+G  +KG ++VTNCF +P  E 
Sbjct: 4   NLTVNVHPGVYMNVVDTHMRRTKSSAKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNES 63

Query: 173 ADQVEAE 193
            D +E +
Sbjct: 64  NDDLEID 70


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +2

Query: 20  VKVHPVVLFQIVDAYER--RNADSHRVIGTLLGTSDKG-VVEVTNCFCVPHKE 169
           V VHP+VL  +VD + R  +     RV+G LLG+  K   +++ N F VP  E
Sbjct: 41  VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDE 93


>AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical
           protein Y67H2A.6 protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +2

Query: 20  VKVHPVVLFQIVDAYERRNADS----HRVIGTLLGTSDKGVVEVTNCF 151
           V +HP+V+ Q+ + Y R          +V G +LG  +   VE  N F
Sbjct: 14  VLLHPLVIMQMSEHYSRTKVQQGPTVKKVFGAILGRQNGRQVEAINSF 61


>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
           protein F25G6.9 protein.
          Length = 1373

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 113 FPIMFR*LYESPHFDVHMHLLFE 45
           F + F  LY+ P F +H HLL E
Sbjct: 367 FVLYFITLYQKPFFPIHRHLLLE 389


>AF016445-7|AAC69060.1|  249|Caenorhabditis elegans Pharyngeal gland
           toxin-relatedprotein 5 protein.
          Length = 249

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 246 DASTRLSSSINTP-WHN*VSASTWSACSLCG 157
           + +T  +S  N+P W N ++A   SAC  CG
Sbjct: 125 NCATITNSQCNSPAWRNIIAADCPSACGFCG 155


>Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical
           protein ZK757.1 protein.
          Length = 324

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 8   LNLSVKVHPVVLFQIVDAYERRNADSHR 91
           LNL      V ++  V  Y++RN D HR
Sbjct: 185 LNLFAVFINVAIYTFVKKYDKRNVDVHR 212


>Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical
          protein D2085.3 protein.
          Length = 666

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 29 HPVVLFQIVDAYERRNADSH 88
          HP+V   I+DA+++R A +H
Sbjct: 17 HPLVAIVILDAFDQRFAPTH 36


>Z27079-12|CAD44154.1|   92|Caenorhabditis elegans Hypothetical
           protein T05G5.12 protein.
          Length = 92

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 192 SASTWSACSLCGTQKQFVTSTTPLSLVPNNVPM 94
           +AST S CS   + K++ +S    + VP   P+
Sbjct: 51  NASTASTCSTTSSSKRYTSSQQSFAFVPPVFPV 83


>Z69663-4|CAA93508.1|  287|Caenorhabditis elegans Hypothetical
           protein K02B9.3a protein.
          Length = 287

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 153 QKQFVTSTTPLSLVPNNVPMTL 88
           Q  FVTS TP+S++P  +  TL
Sbjct: 160 QFYFVTSKTPISVIPPIIICTL 181


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 156 CRTKSTLTKSRPRLNYAMECLW 221
           C T+S LTK   + ++  E LW
Sbjct: 453 CETRSALTKCEGQTSFGSEDLW 474


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,129,802
Number of Sequences: 27780
Number of extensions: 83124
Number of successful extensions: 186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)