Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O01
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    69   3e-13
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   4.6  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    25   6.1  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   6.1  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   6.1  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   6.1  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    25   6.1  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 68.9 bits (161), Expect = 3e-13
 Identities = 29/45 (64%), Positives = 37/45 (82%)
 Frame = +2

Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLK 316
           LF  R ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L  RLK
Sbjct: 26  LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLK 70



 Score = 42.3 bits (95), Expect = 3e-05
 Identities = 19/31 (61%), Positives = 22/31 (70%)
 Frame = +3

Query: 318 VPAPINQFTQTLDNTTAKGLFKILEKYRPET 410
           VP  I QF +TLD  TA  +FK+L KYRPET
Sbjct: 71  VPPAIAQFQKTLDKNTATQVFKLLNKYRPET 101


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +3

Query: 363 TAKGLFKILEKYR 401
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 400 LYFSKILNRPLAVVLSNVWVNWLIGAGTFE 311
           ++   ++NR  AVV    W+   IG G FE
Sbjct: 96  IFSRSLVNRSAAVVHVICWILQFIGHGVFE 125


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 166 EDCKPSIREENKELCY 213
           E CK  + + NKELCY
Sbjct: 947 EACKACLLQGNKELCY 962


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +1

Query: 67  ELKSIQDGXXXXXXXDREKSSGRSTCGEES*A-QEDCKPSIREENKELC 210
           ELKS+ +G       D   S   S C +E  +     KPS   + K+ C
Sbjct: 215 ELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGC 263


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 300 NTAF*RWMRIYFGHRTKRDRSLVGWMSWPIAKF 202
           N  F R +R+YF    + DRSL  +  W   ++
Sbjct: 171 NANFLRQLRVYFECNYQLDRSLRPYRQWLFRRY 203


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 203 NFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKCA 322
           +F   ++ Q T  LSR      Y+R+ R  A++Q++ KCA
Sbjct: 68  SFLKERNAQNTDSLSR----EDYLRLWRHDALMQQQYKCA 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,643,239
Number of Sequences: 5004
Number of extensions: 30497
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)