Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O01
         (411 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...    65   2e-11
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...    64   4e-11
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...    64   4e-11
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569...    27   5.8  
12_02_0887 + 24018847-24019281                                         27   7.7  

>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 29/45 (64%), Positives = 35/45 (77%)
 Frame = +2

Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLK 316
           LFEKR K F IG  + P +DL RFVRWPK +RIQRQ+ VL++RLK
Sbjct: 25  LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLK 69


>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score = 64.1 bits (149), Expect = 4e-11
 Identities = 27/45 (60%), Positives = 35/45 (77%)
 Frame = +2

Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLK 316
           LFEKR K F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLK
Sbjct: 24  LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLK 68



 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +3

Query: 318 VPAPINQFTQTLDNTTAKGLFKILEKYRPE 407
           VP  +NQFT+TLD   A  LFK+L KYRPE
Sbjct: 69  VPPALNQFTRTLDKNLATNLFKMLLKYRPE 98


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score = 64.1 bits (149), Expect = 4e-11
 Identities = 27/45 (60%), Positives = 35/45 (77%)
 Frame = +2

Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLK 316
           LFEKR K F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLK
Sbjct: 8   LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLK 52



 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +3

Query: 318 VPAPINQFTQTLDNTTAKGLFKILEKYRPE 407
           VP  +NQFT+TLD   A  LFK+L KYRPE
Sbjct: 53  VPPALNQFTRTLDKNLATNLFKMLLKYRPE 82


>03_02_0112 +
           5689439-5689474,5689629-5689778,5690194-5690361,
           5691334-5691458,5691914-5692007,5692844-5692942,
           5693730-5693910,5694051-5694166,5694758-5694913,
           5695226-5695354,5695554-5695718
          Length = 472

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 340 NWLIGAGTFETTL*HSLLTLDANIFRPSHETG*ISGWL 227
           N+      ++  L   LLT + N  RPSH    + GW+
Sbjct: 87  NYFFALSKYQHQL-EDLLTKNPNFVRPSHRLNEVQGWV 123


>12_02_0887 + 24018847-24019281
          Length = 144

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 256 AMAEIYSHPASKGCVTASSQMCLRQSTSSPRH*IIPQPKVCSRSWR 393
           AM  I  HP S+     +       S  +P H I+P+P   SR  R
Sbjct: 24  AMRRIPPHPRSRPDAAHAIDRATSASRVAPVHRIVPRPNSVSRQVR 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,788,419
Number of Sequences: 37544
Number of extensions: 203373
Number of successful extensions: 552
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)