Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_O01
         (411 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.77 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.77 
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   1.4  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   1.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   9.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   9.5  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 199 KELCYWPGHPANQR-SIPFRAMAEIYSHPASKGCVTASS 312
           ++ CY+P HP+ Q  S         +S  ASK  ++ SS
Sbjct: 385 EKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSS 423


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 199 KELCYWPGHPANQR-SIPFRAMAEIYSHPASKGCVTASS 312
           ++ CY+P HP+ Q  S         +S  ASK  ++ SS
Sbjct: 385 EKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSS 423


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 169 DCKPSIREENKELCYWPGHPANQ-RSIPFRAM 261
           DC   I +E   L YW G+ AN  R  P +A+
Sbjct: 58  DCFVRIPKEQGFLSYWRGNLANVIRYFPTQAL 89


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 169 DCKPSIREENKELCYWPGHPANQ-RSIPFRAM 261
           DC   I +E   L YW G+ AN  R  P +A+
Sbjct: 58  DCFVRIPKEQGFLSYWRGNLANVIRYFPTQAL 89


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -2

Query: 245 IDLWLAGC 222
           +D+W+AGC
Sbjct: 262 LDVWMAGC 269


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 12/49 (24%), Positives = 19/49 (38%)
 Frame = +1

Query: 226 PANQRSIPFRAMAEIYSHPASKGCVTASSQMCLRQSTSSPRH*IIPQPK 372
           P   R++ ++  A    H  +      S Q+CL      P H   P+ K
Sbjct: 14  PTKLRNLIYKTEAFDSLHAGNAEKTLCSGQVCLGSVMQLPIHGTEPRSK 62


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 111 FFLGFFCTILNGF*LSDLTATNRYVTYSEHQNYRPS 4
           F  GF  T++    L+     +R    S+H   RPS
Sbjct: 726 FAAGFCFTVVYAALLTKTNRISRIFNASKHSAKRPS 761


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,176
Number of Sequences: 438
Number of extensions: 2115
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)