Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_N23
(260 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual 25 1.3
SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr... 25 1.3
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 24 2.9
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 24 2.9
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 24 3.8
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 24 3.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 24 3.8
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos... 23 5.1
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 23 6.7
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 23 8.8
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 23 8.8
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 23 8.8
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 23 8.8
>SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 323
Score = 25.4 bits (53), Expect = 1.3
Identities = 7/20 (35%), Positives = 16/20 (80%)
Frame = -3
Query: 189 LGV*SIKFLQSVYSESCILW 130
L + +++ +Q+VY ++C+LW
Sbjct: 121 LAIGTVEGVQAVYDDACVLW 140
>SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 323
Score = 25.4 bits (53), Expect = 1.3
Identities = 7/20 (35%), Positives = 16/20 (80%)
Frame = -3
Query: 189 LGV*SIKFLQSVYSESCILW 130
L + +++ +Q+VY ++C+LW
Sbjct: 121 LAIGTVEGVQAVYDDACVLW 140
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 24.2 bits (50), Expect = 2.9
Identities = 9/40 (22%), Positives = 19/40 (47%)
Frame = +1
Query: 133 KYTTFRVNTLKKFDTLDSEQALWSQSTELNCHQIPNFYFL 252
++ R++ + L + W++ + CH+ PN FL
Sbjct: 750 QHQAIRIHVIGDILKLPQPISTWNKLLDSECHRNPNMEFL 789
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 24.2 bits (50), Expect = 2.9
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 34 SHEITDIGAFIFNGINYKYNSYKIME-EWLSKAPK--YTTFRV 153
S E TD+ F+F +N ++ +KI +W K Y+ F++
Sbjct: 205 SREPTDVELFMFGQVNSEHCRHKIFNADWTIDGEKKDYSLFKM 247
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 23.8 bits (49), Expect = 3.8
Identities = 11/55 (20%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 64 IFNGINYKYNSYKI-MEEWLSKAPKYTTFRVNTLKKFDTLDSEQALWSQSTELNC 225
++ GI+ + ++ ++ SKA K+ + +K+F+ ++ E+ + T + C
Sbjct: 608 VYAGIDVAIGTLQLGLKRMESKAGKWECIKEIEVKRFEIVEEEEIVIDDKTVIMC 662
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 23.8 bits (49), Expect = 3.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 227 WQFSSVL*DQSACSESRVSNFF 162
W+ +L DQ+ SESR++ F+
Sbjct: 483 WKDMLILKDQTDTSESRITGFY 504
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 23.8 bits (49), Expect = 3.8
Identities = 8/28 (28%), Positives = 14/28 (50%)
Frame = +1
Query: 40 EITDIGAFIFNGINYKYNSYKIMEEWLS 123
++TD F N +K Y + EW++
Sbjct: 1099 KVTDFKIFSVNNTEFKSQVYLYLREWIN 1126
>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 23.4 bits (48), Expect = 5.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 25 VRNSHEITDIGAFIFNGINYKYNSYKIMEE 114
+R HE ++ GINY YN K+ E+
Sbjct: 68 MREKHE-WEVQIRDLGGINYLYNKAKLFED 96
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 23.0 bits (47), Expect = 6.7
Identities = 15/55 (27%), Positives = 21/55 (38%)
Frame = +1
Query: 16 ICHVRNSHEITDIGAFIFNGINYKYNSYKIMEEWLSKAPKYTTFRVNTLKKFDTL 180
+ H R+ + DI +N YK+ +E K P T KFD L
Sbjct: 139 LVHERHPELLVDIRGISEETTTGVHNLYKMFKENKLKVPAINVNDSVTKSKFDNL 193
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 22.6 bits (46), Expect = 8.8
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 124 KAPKYTTFRVNTLKKF 171
K+P+ +T+ V+ LKKF
Sbjct: 231 KSPELSTYEVSELKKF 246
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 22.6 bits (46), Expect = 8.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 109 EEWLSKAPKYTTFRVNTLKKFDTLDSEQA 195
E +LS + TT+ +NT+K +T S A
Sbjct: 528 ETFLSVDRELTTYDLNTIKLLNTAPSRTA 556
>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 31 NSHEITDIGAFIFNGINYKY 90
NS + AF+FN INY +
Sbjct: 222 NSIPYLSLPAFVFNDINYLF 241
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 22.6 bits (46), Expect = 8.8
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 227 WQFSSVL*DQSACSESRVS-NFFKVF 153
+QFSS L QS+ S RVS FK F
Sbjct: 585 FQFSSALKRQSSVSNVRVSGGSFKTF 610
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,000,303
Number of Sequences: 5004
Number of extensions: 17006
Number of successful extensions: 49
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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