Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N23
         (260 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1461 - 26700613-26700621,26700784-26700851,26701778-267019...    26   4.8  
11_06_0544 + 24811913-24812637,24837501-24837589,24837779-24837819     25   6.3  
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652...    25   6.3  
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647     25   6.3  
01_01_0062 + 497728-497922,499444-499481,499576-499598,501156-50...    25   6.3  

>07_03_1461 -
           26700613-26700621,26700784-26700851,26701778-26701919,
           26702011-26702318,26702415-26702481,26702543-26702664,
           26702763-26702815,26702924-26703006,26703092-26703160,
           26703235-26703633
          Length = 439

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 32  ILMKLQILVHLFLTV*TINITHIKSWKNGFQKHQSIQL 145
           +L  L+ L  L LTV T+ +T I    + ++KH S Q+
Sbjct: 138 LLELLRRLQQLELTVDTLTVTEIGKAVSSYRKHNSKQI 175


>11_06_0544 + 24811913-24812637,24837501-24837589,24837779-24837819
          Length = 284

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 135 VYNFQSKHFEEI*YSRLRAGALVSKHRAELPSN 233
           V  FQ+ + +   YSR R G L+ K +  +PS+
Sbjct: 32  VAQFQNMYLQT--YSRTRQGTLIQKSKVVMPSS 62


>10_02_0192 +
           6517985-6518348,6518647-6518699,6519984-6520021,
           6522332-6522717,6523752-6523822,6524620-6524732,
           6525019-6525337,6525576-6525886,6526493-6527069,
           6530483-6530538,6531643-6532126
          Length = 923

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 5/26 (19%)
 Frame = +1

Query: 73  GINYKYNSYKIM-----EEWLSKAPK 135
           GI+ ++NSYKI+     +EWL K  K
Sbjct: 389 GISLQWNSYKILTEQMRQEWLEKVQK 414


>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
          Length = 252

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 97  YKIMEEWLSKAPKYTTFRVNTLKK 168
           +K +++W +K P Y++ +V   KK
Sbjct: 124 HKCVDDWCAKLPPYSSAKVQCYKK 147


>01_01_0062 +
           497728-497922,499444-499481,499576-499598,501156-501262,
           501356-501407,501475-501559,501910-502000,502251-502289,
           502383-502455,503285-503344,503439-503512,503606-503698,
           503779-503880,504048-504128,504352-504426,504486-504614,
           504705-504809
          Length = 473

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 49  DIGAFIFNGINY-KYNSYKIMEEWLSK 126
           DI A   NGI+  KY SYK  E W+ K
Sbjct: 220 DIVANGRNGIDVDKYGSYKACESWVMK 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,762,308
Number of Sequences: 37544
Number of extensions: 85711
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)