Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_N23
(260 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resis... 33 0.037
Z48621-7|CAA88546.1| 770|Caenorhabditis elegans Hypothetical pr... 28 0.79
AL031633-27|CAA21029.2| 385|Caenorhabditis elegans Hypothetical... 27 2.4
U64598-7|AAK39218.3| 523|Caenorhabditis elegans Twik family of ... 26 3.2
AY255664-1|AAQ96601.1| 523|Caenorhabditis elegans two-P domain ... 26 3.2
AF040647-10|AAB94993.1| 124|Caenorhabditis elegans Hypothetical... 26 4.2
Z81030-2|CAB02704.2| 343|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z72508-6|CAA96643.1| 415|Caenorhabditis elegans Hypothetical pr... 25 5.6
AF047658-1|AAC04418.2| 348|Caenorhabditis elegans Hypothetical ... 25 7.4
AC084155-4|AAG23365.1| 410|Caenorhabditis elegans Hypothetical ... 25 7.4
>U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug
resistance protein familyprotein 6 protein.
Length = 1396
Score = 32.7 bits (71), Expect = 0.037
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 28 RNSHEITDIGAFIFNGINYKYNSYKIMEEWLSKAPKYTTFRV 153
RN+ TD+ GI+ KY + K+ +W+S PK T F V
Sbjct: 51 RNAQTDTDLLEKPSKGISAKYAAQKLESKWISSGPKRTHFLV 92
>Z48621-7|CAA88546.1| 770|Caenorhabditis elegans Hypothetical
protein R07B1.9 protein.
Length = 770
Score = 28.3 bits (60), Expect = 0.79
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 224 QFSSVL*DQSACSESRVSNFFKVFTLKVVYFGAFESHSSMILYELYL 84
QFS V D + R+ NF V T + ++ + +H S++ LYL
Sbjct: 32 QFSKVGLDNYRDIDFRLLNFIHVVTGCIGFYSLWRNHGSIVTKSLYL 78
>AL031633-27|CAA21029.2| 385|Caenorhabditis elegans Hypothetical
protein Y39A1A.17 protein.
Length = 385
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 44 LQILVHLFLTV*TINITHIKSWKN 115
L ILVHL + T+N H K WK+
Sbjct: 273 LSILVHLLNCLETVNPLHEKLWKS 296
>U64598-7|AAK39218.3| 523|Caenorhabditis elegans Twik family of
potassium channelsprotein 28 protein.
Length = 523
Score = 26.2 bits (55), Expect = 3.2
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +1
Query: 43 ITDIGAFIFNGINYKYNSYKIMEEWLSKAPKYTTFRVNTLKKFDTLDSEQALWSQSTELN 222
I DIG F+ ++Y Y SY+ + L + K T + + + + S S++ +N
Sbjct: 213 IADIGKFLSEFLSYLYRSYRGFKRKLRRQSKKITSQYRS--QSQSRSSSVMGSSKAGSMN 270
Query: 223 CHQI 234
H I
Sbjct: 271 LHDI 274
>AY255664-1|AAQ96601.1| 523|Caenorhabditis elegans two-P domain K
channel protein.
Length = 523
Score = 26.2 bits (55), Expect = 3.2
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +1
Query: 43 ITDIGAFIFNGINYKYNSYKIMEEWLSKAPKYTTFRVNTLKKFDTLDSEQALWSQSTELN 222
I DIG F+ ++Y Y SY+ + L + K T + + + + S S++ +N
Sbjct: 213 IADIGKFLSEFLSYLYRSYRGFKRKLRRQSKKITSQYRS--QSQSRSSSVMGSSKAGSMN 270
Query: 223 CHQI 234
H I
Sbjct: 271 LHDI 274
>AF040647-10|AAB94993.1| 124|Caenorhabditis elegans Hypothetical
protein F54D12.2 protein.
Length = 124
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 127 APKYTTFRVNTLKKFDTLDSEQALWSQSTE 216
A KY +V+ LK F +L + L++QST+
Sbjct: 75 AVKYVYDKVSCLKNFASLFTSSTLYTQSTD 104
>Z81030-2|CAB02704.2| 343|Caenorhabditis elegans Hypothetical
protein C01G10.2 protein.
Length = 343
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -1
Query: 188 SESRVSNFFKVFTLKVVYFGAFESHSSMILYELYL*FIPLKINA 57
S S SNF + Y G + M L+ + L PL INA
Sbjct: 158 SRSENSNFMLFSNEHLAYIGLLSTPEHMQLWAVALIVFPLSINA 201
>Z72508-6|CAA96643.1| 415|Caenorhabditis elegans Hypothetical
protein F28H7.7 protein.
Length = 415
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +1
Query: 46 TDIGAFIFNGINYKYNSYKIMEEWLSKAPKYTTFRVNTLKKFDTLDSEQALWSQSTE--L 219
T I F+ + ++ KY + W+ K K +N ++ + S + W +T+ L
Sbjct: 260 TTIRNFLQDSVSEKYGGVMFPQRWIFKYEKLPEKFINPVQIMQEMPSRK--WELTTQPWL 317
Query: 220 NC 225
NC
Sbjct: 318 NC 319
>AF047658-1|AAC04418.2| 348|Caenorhabditis elegans Hypothetical
protein K03H6.2 protein.
Length = 348
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 66 NKCTNICNFMRIPNMTYD 13
N T+I N R PN+TYD
Sbjct: 46 NSITHILNCPRAPNVTYD 63
>AC084155-4|AAG23365.1| 410|Caenorhabditis elegans Hypothetical
protein Y45G5AM.3 protein.
Length = 410
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +1
Query: 49 DIGAFIFNGINYKYNSYKIMEEWLSK 126
D+ + + N NY + K E+W+ K
Sbjct: 158 DVRSILLNNCNYYQEAAKFAEKWMKK 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,376,325
Number of Sequences: 27780
Number of extensions: 89613
Number of successful extensions: 208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -