Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_N23
         (260 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   0.82 
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    20   4.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    19   7.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    19   7.6  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 0.82
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +1

Query: 10  LVICHVRNSH--EITDIGAFIFNGINYKYNSY-KIMEEWLSKAPKYTTFRVN 156
           L+ C V  S    I D   F     N   NS+ ++     +  P+YTTF +N
Sbjct: 190 LLSCEVNGSTLVYIGDNEGFALIIYNNSDNSFQRLTSSTFASDPRYTTFTIN 241


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +1

Query: 70  NGINYKYNSYKIMEEWLSKAPKYTTFRVN 156
           N  NY  N+YK      +K   Y  + +N
Sbjct: 320 NNYNYNNNNYKYNYNNYNKKLYYKNYIIN 348


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 5/18 (27%), Positives = 10/18 (55%)
 Frame = -3

Query: 177 SIKFLQSVYSESCILWCF 124
           S+  + S+    C++W F
Sbjct: 65  SMLLIMSLVGNCCVIWIF 82


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 5/18 (27%), Positives = 10/18 (55%)
 Frame = -3

Query: 177 SIKFLQSVYSESCILWCF 124
           S+  + S+    C++W F
Sbjct: 65  SMLLIMSLVGNCCVIWIF 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,228
Number of Sequences: 438
Number of extensions: 1048
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4762122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)